[1] "2025-04-29 19:31:37 MDT" [1] "1310" "131010" "d283" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131010a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:31:41 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.737" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.812, ave o2scale2 = 0.737" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "36 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:31:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:31:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:32:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:32:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 36 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1400 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:32:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.4" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.438 co2off = 382 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 88 97 0.08475107 0.09101042 0.08857600 3 -17.29588 298.3233 3 4 98 107 0.09170605 0.09796528 0.09553108 3 29.88260 207.7020 4 3 108 117 0.09866088 0.10492020 0.10387707 3 54.61641 138.1468 6 4 388 397 0.29347263 0.29973235 0.29729800 2 29.99775 207.6126 7 2 398 407 0.30042769 0.30669103 0.30425569 2 -17.19896 292.9094 9 2 687 696 0.50216667 0.50842677 0.50599234 3 -17.17634 298.9004 10 4 697 706 0.50912199 0.51538189 0.51294724 3 29.91014 207.4246 11 5 707 716 0.51607714 0.52234028 0.52129606 NA 23.26062 189.0306 12 3 717 726 0.52303588 0.52929514 0.52825179 3 54.54699 133.4943 16 4 987 996 0.71084537 0.71710868 0.71467195 2 29.84086 207.7200 17 2 997 1006 0.71780402 0.72406372 0.72162910 2 -17.55599 295.8582 19 2 1286 1295 0.91954282 0.92580258 0.92336796 3 -17.97602 298.2556 20 4 1296 1305 0.92649812 0.93276157 0.93032427 3 29.72788 207.4523 21 3 1306 1315 0.93345712 0.93971635 0.93867304 3 54.67838 135.1865 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.229311 1.353868 -5.794213e-03 0.4414352 0.017787812 2.530965 3 1.229714 1.354294 4.972587e-03 -0.5594415 0.015490598 3.795724 4 1.230005 1.354592 -3.629906e-05 2.5483720 0.004830259 3.359157 6 1.228995 1.353243 -6.070745e-03 1.0424024 0.018776351 2.929506 7 1.229234 1.353496 -7.595747e-03 0.8563207 0.022795087 2.895542 9 1.229921 1.354039 -7.590222e-03 0.4691528 0.019301589 3.351165 10 1.230056 1.354192 -5.497565e-04 1.0909785 0.008807258 2.855307 11 1.229843 1.353939 -5.291181e-02 0.2622266 0.037476659 4.120673 12 1.229639 1.353724 1.237163e-03 2.0051307 0.006049502 2.662714 16 1.235073 1.359447 -3.835743e-03 -1.3199950 0.011862058 3.668068 17 1.235417 1.359827 -7.486878e-03 1.5302393 0.020615459 7.515188 19 1.239881 1.364857 9.192574e-04 -1.0963791 0.008990194 3.132171 20 1.239660 1.364660 9.621213e-04 -0.7256884 0.010221838 2.778909 21 1.239517 1.364494 6.415244e-03 1.8352998 0.017447640 3.478750 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.913 co2l1 = 0.433 co2l0 = 0.165" [1] "co2l0 = -143.14 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "88 out of 285 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "197 out of 1214 1-min values rejected as stack air" [1] "177 out of 1156 Line 1 1-min values rejected as stack air" [1] "20 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"