[1] "2025-04-29 19:31:00 MDT" [1] "1310" "131009" "d282" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131009a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:31:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.81, ave o2scale2 = 0.735" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.81, ave o2scale2 = 0.735" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "43 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:31:05 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:31:05 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:31:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:31:27 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1391 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:31:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.98 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.436 co2off = 378.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.66 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 61 70 0.04222419 0.04848727 0.04605250 2 29.85580 214.8820 3 2 71 80 0.04918278 0.05544196 0.05300762 2 -17.79462 294.5338 5 2 360 369 0.25090075 0.25716088 0.25472627 3 -17.71104 296.1916 6 4 370 379 0.25785639 0.26412969 0.26169373 3 29.82914 202.2498 8 3 389 398 0.27178009 0.27803941 0.27699610 3 54.74187 132.4113 10 4 659 668 0.45961791 0.46587682 0.46344268 2 29.81939 208.3848 11 2 669 678 0.46657283 0.47283562 0.47039823 2 -17.57595 293.1589 13 2 936 942 0.66830845 0.67317656 0.67178571 3 -17.43752 301.5753 14 4 943 952 0.67526319 0.68152208 0.67908817 3 29.89693 206.8097 15 3 953 962 0.68221939 0.68848032 0.68743737 3 54.66635 135.6436 18 4 1225 1233 0.87604450 0.88161227 0.87952301 2 29.95913 205.7268 19 2 1234 1242 0.88230787 0.88787538 0.88578683 2 -17.12761 297.2826 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.241088 1.366251 -2.180852e-05 0.47872340 0.007577975 4.041515 3 1.241047 1.366273 -6.027654e-03 -1.21565764 0.019883309 3.949460 5 1.239486 1.364475 -2.860518e-03 0.02568181 0.018911564 3.557685 6 1.239389 1.364386 -7.154661e-04 0.22462314 0.004538495 1.616981 8 1.238565 1.363530 8.150943e-04 -3.22691086 0.003970516 4.276420 10 1.235607 1.360557 3.759674e-04 -0.35236025 0.007562149 9.015383 11 1.235937 1.360914 -1.206195e-02 -0.49314916 0.031535123 2.531429 13 1.232828 1.357426 -5.500771e-03 -0.22090971 0.009047312 1.411507 14 1.232960 1.357853 4.983587e-03 1.40401761 0.016964295 10.501989 15 1.232814 1.357704 -4.891058e-03 1.56601378 0.012377657 2.137323 18 1.229184 1.354139 -7.132691e-04 -2.08028403 0.006025013 5.349995 19 1.229100 1.353936 -9.098941e-04 3.70545234 0.005013097 8.771477 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.942 co2l1 = 0.434 co2l0 = 0.168" [1] "co2l0 = -144.1 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "69 out of 285 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "216 out of 1204 1-min values rejected as stack air" [1] "128 out of 718 Line 1 1-min values rejected as stack air" [1] "88 out of 486 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"