[1] "2025-04-29 19:29:02 MDT" [1] "1310" "131006" "d279" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/131006a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:29:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.795, ave o2scale2 = 0.723" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.795, ave o2scale2 = 0.723" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:29:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:29:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:29:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:29:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1406 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:29:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.428 co2off = 382.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 4 172 181 0.1202014 0.1264607 0.1240264 2 29.44530 208.3796 1.270725 4 2 182 191 0.1271563 0.1334155 0.1309816 2 -19.88212 293.1240 1.270097 5 5 192 201 0.1341124 0.1403732 0.1393301 NA 25.10906 176.3646 1.269884 9 2 468 477 0.3289125 0.3351718 0.3327376 3 -19.37034 289.1187 1.261260 10 4 478 487 0.3358672 0.3421266 0.3396925 3 29.56798 200.1978 1.260836 11 3 488 497 0.3428219 0.3490853 0.3480421 3 55.17351 129.2061 1.260535 13 4 755 764 0.5376240 0.5438842 0.5414493 2 29.80959 202.6455 1.251090 14 2 765 774 0.5445797 0.5508426 0.5484058 2 -18.62507 301.4583 1.251353 17 2 1047 1056 0.7463304 0.7525900 0.7501558 3 -18.05921 297.4249 1.250971 18 4 1057 1066 0.7532853 0.7595450 0.7571106 3 29.85591 205.5023 1.250737 19 5 1067 1076 0.7602404 0.7665033 0.7654600 NA 25.60903 186.2097 1.250614 20 3 1077 1086 0.7671990 0.7734583 0.7724149 3 55.03241 138.9949 1.250755 22 4 1342 1351 0.9550382 0.9613046 0.9588679 2 29.87941 206.0798 1.251831 23 2 1352 1361 0.9620000 0.9682603 0.9658256 2 -18.23716 300.4323 1.251894 jfcv2 co2slp o2slp co2sd o2sd 3 1.396653 0.0029458011 0.92867135 0.008145745 2.609693 4 1.395998 0.0073591465 -0.03504185 0.023222729 3.696644 5 1.395801 0.0103611851 3.13916139 0.007336233 6.131045 9 1.385631 -0.0049161114 -1.08611348 0.014195696 5.028295 10 1.385098 0.0049390113 -0.02872856 0.012289148 1.791377 11 1.384691 0.0025236056 -1.66658787 0.008839367 2.175525 13 1.374553 -0.0079363965 -0.27895155 0.020157359 3.087024 14 1.374826 -0.0078996082 0.83461137 0.026364047 3.914225 17 1.377249 -0.0123822616 0.75092400 0.033264681 2.531996 18 1.377013 -0.0008481565 0.55536698 0.010131391 3.976416 19 1.376840 0.0144158762 -2.42022478 0.010208854 3.265034 20 1.376998 0.0008097529 6.03224125 0.003265588 8.413892 22 1.377888 -0.0018021258 -0.23144054 0.006561177 1.430745 23 1.377945 -0.0143853211 1.88999508 0.035971714 5.702045 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.313 co2l1 = 0.423 co2l0 = 0.179" [1] "co2l0 = -141.7 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "96 out of 380 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "284 out of 1206 1-min values rejected as stack air" [1] "259 out of 822 Line 1 1-min values rejected as stack air" [1] "25 out of 384 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"