[1] "2017-04-06 01:27:52 MDT"
[1] "1310"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1310/131005.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1310/131006.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1310/131007.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1310/131008.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1310/131009.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1310/131010.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1310/131011.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1310/131012.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1310/131013.html"  
[10] "/net/www/docs/homes/stephens/GO2/1310/131014.html"  
[11] "/net/www/docs/homes/stephens/GO2/1310/131015.html"  
[12] "/net/www/docs/homes/stephens/GO2/1310/131016.html"  
[13] "/net/www/docs/homes/stephens/GO2/1310/131017.html"  
[14] "/net/www/docs/homes/stephens/GO2/1310/131018.html"  
[15] "/net/www/docs/homes/stephens/GO2/1310/131019.html"  
[16] "/net/www/docs/homes/stephens/GO2/1310/131020.html"  
[17] "/net/www/docs/homes/stephens/GO2/1310/131021.html"  
[18] "/net/www/docs/homes/stephens/GO2/1310/131022.html"  
[19] "/net/www/docs/homes/stephens/GO2/1310/lmg_1310.html"
 [1] "/net/www/docs/homes/stephens/GO2/1310/131005.html"
 [2] "/net/www/docs/homes/stephens/GO2/1310/131006.html"
 [3] "/net/www/docs/homes/stephens/GO2/1310/131007.html"
 [4] "/net/www/docs/homes/stephens/GO2/1310/131008.html"
 [5] "/net/www/docs/homes/stephens/GO2/1310/131009.html"
 [6] "/net/www/docs/homes/stephens/GO2/1310/131010.html"
 [7] "/net/www/docs/homes/stephens/GO2/1310/131011.html"
 [8] "/net/www/docs/homes/stephens/GO2/1310/131012.html"
 [9] "/net/www/docs/homes/stephens/GO2/1310/131013.html"
[10] "/net/www/docs/homes/stephens/GO2/1310/131014.html"
[11] "/net/www/docs/homes/stephens/GO2/1310/131015.html"
[12] "/net/www/docs/homes/stephens/GO2/1310/131016.html"
[13] "/net/www/docs/homes/stephens/GO2/1310/131017.html"
[14] "/net/www/docs/homes/stephens/GO2/1310/131018.html"
[15] "/net/www/docs/homes/stephens/GO2/1310/131019.html"
[16] "/net/www/docs/homes/stephens/GO2/1310/131020.html"
[17] "/net/www/docs/homes/stephens/GO2/1310/131021.html"
[18] "/net/www/docs/homes/stephens/GO2/1310/131022.html"
[1] "131005" "131022"
 [1] "131005" "131006" "131007" "131008" "131009" "131010" "131011" "131012"
 [9] "131013" "131014" "131015" "131016" "131017" "131018" "131019" "131020"
[17] "131021" "131022"
[1] "000000" "999999"
[1] "131005_mr_proc.txt, 131005_cal_periods.txt, 131005_cal_param.txt,692jogs"
[1] "131006_mr_proc.txt, 131006_cal_periods.txt, 131006_cal_param.txt,1406jogs"
[1] "131007_mr_proc.txt, 131007_cal_periods.txt, 131007_cal_param.txt,1435jogs"
[1] "131008_mr_proc.txt, 131008_cal_periods.txt, 131008_cal_param.txt,1422jogs"
[1] "131009_mr_proc.txt, 131009_cal_periods.txt, 131009_cal_param.txt,1391jogs"
[1] "131010_mr_proc.txt, 131010_cal_periods.txt, 131010_cal_param.txt,1400jogs"
[1] "131011_mr_proc.txt, 131011_cal_periods.txt, 131011_cal_param.txt,1391jogs"
[1] "131012_mr_proc.txt, 131012_cal_periods.txt, 131012_cal_param.txt,1411jogs"
[1] "131013_mr_proc.txt, 131013_cal_periods.txt, 131013_cal_param.txt,1377jogs"
[1] "131014_mr_proc.txt, 131014_cal_periods.txt, 131014_cal_param.txt,1417jogs"
[1] "131015_mr_proc.txt, 131015_cal_periods.txt, 131015_cal_param.txt,1432jogs"
[1] "131016_mr_proc.txt, 131016_cal_periods.txt, 131016_cal_param.txt,1218jogs"
[1] "Output file empty for 131017"
[1] "131018_mr_proc.txt, 131018_cal_periods.txt, 131018_cal_param.txt,1394jogs"
[1] "131019_mr_proc.txt, 131019_cal_periods.txt, 131019_cal_param.txt,1339jogs"
[1] "131020_mr_proc.txt, 131020_cal_periods.txt, 131020_cal_param.txt,1433jogs"
[1] "131021_mr_proc.txt, 131021_cal_periods.txt, 131021_cal_param.txt,1398jogs"
[1] "131022_mr_proc.txt, 131022_cal_periods.txt, 131022_cal_param.txt,53jogs"
[1] "131005" "131022" "d278"   "d295"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 01:28:31 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.811, ave o2scale2 = 0.737"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 01:28:51 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 01:29:22 MDT"
[1] "2017-04-06 01:29:28 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -452.3"
[1] "position 2 cylinder CB08911 description: MS CO2 = 405.13 O2 = -631.8"
[1] "position 3 cylinder CB08905 description: LS CO2 = 394.79 O2 = -549"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.89 O2 = -579.1"
[1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.15 O2 = -1145.4"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1310 Valve transient for  Line 1 after Line 2 = 0.14 , 0.05 , 0.07 , -0.02 , -0.03 n = 7"
[1] "1310 Valve transient for  Line 1 after Cal = 0.49 , 0.19 , -0.01 , 0 , 0 n = 53"
[1] "1310 Valve transient for  Line 2 after Line 1 = 0.31 , 0.2 , 0.64 , -0.13 , -0.16 n = 10"
[1] "1310 Valve transient for  Line 2 after Cal = -0.66 , -0.4 , -0.13 , -0.11 , -0.06 n = 6"
[1] "1310 Valve transient for  Line 1 after HS = -1.58 , -0.77 , 0 , -0.02 , -0.02 n = 16"
[1] "1310 Valve transient for  Line 1 after MS = 0.78 , 0.38 , 0.01 , 0.03 , 0.02 n = 29"
[1] "1310 Valve transient for  Line 1 after LT = -2.54 , -2.14 , -1.38 , -0.65 , -0.26 n = 8"
[1] "1310 Valve transient for  Line 2 after HS = -2.56 , -2.19 , -1.81 , -1.78 , -1.75 n = 4"
[1] "1310 Valve transient for  Line 2 after MS = 0.75 , 0.36 , -0.05 , -0.04 , -0.04 n = 3"
[1] "1310 Valve transient for  Line 2 after LT = -2.54 , -2.16 , -1.32 , -0.63 , -0.25 n = 1"
[1] "1310 Valve transient for  HS after Line 1 = 1.14 , 0.58 , 0.01 , 0 , 0 n = 29"
[1] "1310 Valve transient for  HS after Line 2 = 1.15 , 0.59 , 0.03 , 0.02 , 0.01 n = 4"
[1] "1310 Valve transient for  HS after LS = 3.49 , 1.76 , 0.02 , 0.01 , 0.01 n = 35"
[1] "1310 Valve transient for  MS after LS = -1.67 , -0.85 , -0.02 , -0.01 , 0 n = 21"
[1] "1310 Valve transient for  MS after LT = -1.73 , -0.87 , -0.01 , -0.01 , 0 n = 12"
[1] "1310 Valve transient for  LS after Line 1 = 1 , 0.51 , 0.01 , 0 , 0 n = 29"
[1] "1310 Valve transient for  LS after Line 2 = 1 , 0.51 , 0.02 , 0.01 , 0.01 n = 5"
[1] "1310 Valve transient for  LS after HS = -3.31 , -1.65 , -0.01 , 0 , 0 n = 35"
[1] "1310 Valve transient for  LT after HS = -0.89 , -0.23 , 0.4 , 0.33 , 0.27 n = 10"
[1] "1310 Valve transient for  LT after LS = 0.42 , 0.43 , 0.38 , 0.31 , 0.25 n = 10"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "644 out of 5315 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "4671 out of 18622 1-min values rejected as stack air"
[1] "3750 out of 15460 Line 1 1-min values rejected as stack air"
[1] "921 out of 3162 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1310loxy.d278"
[1] "LMG1310loxy.d279"
[1] "LMG1310loxy.d280"
[1] "LMG1310loxy.d281"
[1] "LMG1310loxy.d291"
[1] "LMG1310loxy.d292"
[1] "LMG1310loxy.d293"
[1] "LMG1310loxy.d294"
[1] "LMG1310loxy.d295"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.4241782
 [2,]  97.5 0.3181336
 [3,] 102.5 0.6362672
 [4,] 107.5 1.0604454
 [5,] 112.5 0.8483563
 [6,] 117.5 0.8483563
 [7,] 122.5 1.5906681
 [8,] 127.5 1.0604454
 [9,] 132.5 0.9544008
[10,] 137.5 0.2120891
[11,] 142.5 0.6362672
[12,] 147.5 0.1060445
[13,] 152.5 0.2120891
[14,] 157.5 0.2120891
[15,] 162.5 0.1060445
[16,] 167.5 0.1060445
[17,] 172.5 0.1060445
[18,] 177.5 0.3181336
[19,] 182.5 0.2120891
[20,] 187.5 0.1060445
[21,] 192.5 0.3181336
[22,] 207.5 0.1060445
[23,] 212.5 0.2120891
[24,] 217.5 0.4241782
[25,] 222.5 1.0604454
[26,] 227.5 0.4241782
[27,] 232.5 0.1060445
[28,] 237.5 0.4241782
[29,] 242.5 0.8483563
[30,] 247.5 0.3181336
[31,] 252.5 0.2120891
[32,] 257.5 0.5302227
[33,] 262.5 0.3181336
[34,] 272.5 0.1060445
[35,] 277.5 0.3181336
[36,] 282.5 0.1060445
[37,] 292.5 0.1060445
[38,] 297.5 0.2120891
[39,] 302.5 0.1060445
[40,] 307.5 0.1060445
[41,] 317.5 0.3181336
[42,] 322.5 0.3181336
[43,] 332.5 0.2120891
[44,] 342.5 0.1060445
[45,] 357.5 0.1060445
[46,] 362.5 0.1060445
[47,] 367.5 0.1060445
[48,] 377.5 0.1060445
[49,] 382.5 0.1060445
[50,] 392.5 0.1060445
[51,] 397.5 0.1060445
[52,] 402.5 0.1060445
[53,] 407.5 0.2120891
[54,] 412.5 0.2120891
[55,] 417.5 0.1060445
[56,] 422.5 0.1060445
[57,] 432.5 0.2120891
[58,] 437.5 0.2120891
[59,] 442.5 0.5302227
[60,] 447.5 0.2120891
       [,1]      [,2]
 [1,]  92.5 0.2120891
 [2,]  97.5 0.3181336
 [3,] 102.5 0.6362672
 [4,] 107.5 0.4241782
 [5,] 112.5 0.8483563
 [6,] 117.5 0.5302227
 [7,] 122.5 0.6362672
 [8,] 127.5 0.8483563
 [9,] 132.5 0.8483563
[10,] 137.5 0.1060445
[11,] 147.5 0.4241782
[12,] 157.5 0.1060445
[13,] 207.5 0.1060445
[14,] 217.5 0.5302227
[15,] 222.5 1.4846235
[16,] 227.5 1.2725345
[17,] 232.5 1.8027572
[18,] 237.5 2.6511135
[19,] 242.5 2.5450689
[20,] 247.5 0.9544008
[21,] 252.5 0.4241782
[22,] 257.5 0.6362672
[23,] 262.5 0.1060445
[24,] 267.5 0.1060445
[25,] 282.5 0.1060445
[26,] 307.5 0.1060445
[27,] 317.5 0.8483563
[28,] 322.5 1.0604454
[29,] 327.5 1.8027572
[30,] 332.5 1.4846235
[31,] 337.5 0.7423118
[32,] 342.5 0.1060445
[33,] 347.5 0.2120891
[34,] 352.5 0.4241782
[35,] 357.5 0.1060445
[36,] 367.5 0.1060445
[37,] 382.5 0.1060445
[38,] 392.5 0.2120891
[39,] 397.5 0.1060445
[40,] 402.5 0.2120891
[41,] 412.5 0.1060445
[42,] 417.5 0.1060445
[43,] 422.5 0.1060445
[44,] 432.5 0.1060445
[45,] 437.5 0.1060445
[46,] 442.5 0.1060445
[47,] 447.5 0.2120891
       [,1]      [,2]
 [1,]  92.5 0.2120891
 [2,]  97.5 1.0604454
 [3,] 102.5 0.7423118
 [4,] 107.5 1.0604454
 [5,] 112.5 0.8483563
 [6,] 117.5 0.5302227
 [7,] 122.5 0.1060445
 [8,] 127.5 0.1060445
 [9,] 132.5 0.2120891
[10,] 152.5 0.1060445
[11,] 157.5 0.1060445
[12,] 182.5 0.1060445
[13,] 187.5 0.1060445
[14,] 197.5 0.2120891
[15,] 202.5 0.3181336
[16,] 207.5 0.3181336
[17,] 212.5 0.3181336
[18,] 217.5 0.1060445
[19,] 222.5 0.1060445
[20,] 227.5 0.3181336
[21,] 232.5 0.3181336
[22,] 237.5 0.1060445
[23,] 242.5 0.1060445
[24,] 247.5 0.1060445
[25,] 267.5 0.1060445
[26,] 297.5 0.1060445
[27,] 302.5 0.4241782
[28,] 307.5 0.2120891
[29,] 312.5 0.2120891
[30,] 317.5 0.9544008
[31,] 322.5 1.0604454
[32,] 327.5 2.0148462
[33,] 332.5 0.9544008
[34,] 342.5 0.1060445
[35,] 347.5 0.2120891
[36,] 352.5 0.2120891
[37,] 362.5 0.2120891
[38,] 367.5 0.6362672
[39,] 372.5 0.9544008
[40,] 377.5 2.0148462
[41,] 382.5 3.7115589
[42,] 387.5 2.7571580
[43,] 392.5 1.3785790
[44,] 397.5 1.2725345
[45,] 402.5 0.6362672
[46,] 407.5 0.3181336
[47,] 417.5 0.1060445
[48,] 422.5 0.1060445
[49,] 432.5 0.4241782
[50,] 437.5 0.2120891
[51,] 442.5 0.4241782
[52,] 447.5 0.1060445
       [,1]      [,2]
 [1,]  92.5 0.2120891
 [2,] 107.5 0.1060445
 [3,] 197.5 0.3181336
 [4,] 202.5 0.3181336
 [5,] 222.5 0.1060445
 [6,] 227.5 0.1060445
 [7,] 232.5 0.2120891
 [8,] 242.5 0.2120891
 [9,] 307.5 0.1060445
[10,] 312.5 0.1060445
[11,] 317.5 0.2120891
[12,] 322.5 0.1060445
[13,] 327.5 0.2120891
[14,] 332.5 0.1060445
[15,] 337.5 0.3181336
[16,] 342.5 0.2120891
[17,] 347.5 0.1060445
[18,] 367.5 0.2120891
[19,] 372.5 3.2873807
[20,] 377.5 4.5599152
[21,] 382.5 3.6055143
[22,] 387.5 3.6055143
[23,] 392.5 1.2725345
[24,] 397.5 1.4846235
[25,] 402.5 0.8483563
[26,] 407.5 0.2120891
[27,] 412.5 0.1060445
[28,] 422.5 0.1060445
[29,] 437.5 0.3181336
[30,] 442.5 0.1060445
[31,] 447.5 0.5302227
[1] "making cruise html"
[1] "2017-04-06 01:30:03 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"