[1] "2025-04-29 19:27:15 MDT" [1] "1309" "130926" "d269" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130926a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 73344 63 [1] 73344 [1] 73344 [1] "testing skipping spike filter" [1] 73344 [1] 73344 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:27:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.697" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.697" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:27:19 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:27:19 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:27:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:27:36 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1212 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:27:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB09982 description: WT1 CO2 = 479.38 O2 = -1131.8" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.438 co2off = 390.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.0008104456 0.006378443 0.004291795 1 -14.17535 303.4059 4 2 290 299 0.2018425058 0.208101910 0.205667589 3 -14.58654 294.2866 5 4 300 309 0.2087974537 0.215060764 0.212625203 3 32.39259 204.7657 6 3 310 319 0.2157560475 0.222016146 0.220972786 3 56.95251 134.4483 8 4 588 597 0.4105386285 0.416798785 0.414364478 2 32.15526 204.4879 9 2 598 607 0.4174943866 0.423753530 0.421319564 2 -15.26573 292.1368 10 5 608 617 0.4244491609 0.430708333 0.429665169 NA 27.55241 180.7913 12 2 885 894 0.6192094907 0.625468750 0.623034422 3 -15.35541 287.2161 13 4 895 904 0.6261643519 0.632423322 0.629989214 3 32.11109 190.9665 14 3 905 914 0.6331189236 0.639378299 0.638335026 3 56.80110 132.7917 16 4 1181 1190 0.8279368924 0.834249479 0.831785116 2 32.07356 200.7172 17 2 1191 1200 0.8349449363 0.841204861 0.838770186 2 -15.05641 287.7774 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.304407 1.425075 -0.0057278127 6.07953292 0.012462332 14.515261 4 1.308832 1.429981 -0.0014577894 -1.56503257 0.011911361 12.277502 5 1.309023 1.430163 0.0006368544 0.09506148 0.005405334 1.489735 6 1.309215 1.430628 0.0004152400 15.43995448 0.006899747 20.431884 8 1.314620 1.436001 -0.0071776340 0.20010097 0.018589655 5.745416 9 1.314946 1.436455 -0.0036852959 -1.03226628 0.011188360 5.312182 10 1.315080 1.436605 0.0136681368 0.17460862 0.009678524 4.109680 12 1.318458 1.439978 0.0184521981 0.40399885 0.047344188 6.444138 13 1.318401 1.440073 0.0044367645 -1.44835862 0.014930157 10.506403 14 1.318646 1.440307 -0.0016988794 -0.88084667 0.005501008 1.273713 16 1.323909 1.446362 -0.0036287015 0.87200074 0.012952954 7.036937 17 1.324100 1.446560 -0.0013334142 -1.09566764 0.008126301 6.104751 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.81 co2l1 = 0.435 co2l0 = 0.129" [1] "co2l0 = -142.95 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "109 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "56 out of 1041 1-min values rejected as stack air" [1] "55 out of 802 Line 1 1-min values rejected as stack air" [1] "1 out of 239 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"