[1] "2025-04-29 19:26:26 MDT" [1] "1309" "130925" "d268" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130925a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:26:30 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.706" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.706" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:26:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:26:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:26:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:26:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:27:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.451 co2off = 369.98 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 227 236 0.1583691 0.1646297 0.1621959 2 33.29718 193.2399 1.298017 3 2 237 246 0.1653253 0.1715850 0.1691509 2 -12.64845 279.6598 1.297879 4 5 247 256 0.1722804 0.1785402 0.1774970 NA 28.92778 177.9956 1.297584 6 2 526 535 0.3670814 0.3733412 0.3709068 3 -12.78206 292.0936 1.294466 7 4 536 545 0.3740366 0.3802957 0.3778616 3 33.18705 201.0562 1.294397 8 3 546 555 0.3809914 0.3872509 0.3862077 3 57.15277 137.7526 1.294202 10 4 823 832 0.5757516 0.5820111 0.5795766 2 33.15035 200.0258 1.293858 11 2 833 842 0.5827065 0.5889653 0.5865315 2 -12.82612 293.0700 1.293965 13 2 1116 1125 0.7844097 0.7906725 0.7882385 3 -13.01013 294.3304 1.297069 14 4 1126 1135 0.7913681 0.7976273 0.7951934 3 32.99238 204.2329 1.297057 15 5 1136 1145 0.7983229 0.8045823 0.8035389 NA 28.47425 183.1630 1.297528 16 3 1146 1155 0.8052778 0.8115405 0.8104973 3 57.03087 138.9367 1.297678 18 4 1415 1423 0.9931602 0.9994198 0.9970352 1 32.63804 205.5505 1.304214 jfcv2 co2slp o2slp co2sd o2sd 2 1.418749 -0.0063829724 -1.9966085 0.018103634 16.900366 3 1.418509 0.0026186407 -2.7005557 0.013201327 10.027348 4 1.418051 0.0054304856 1.9289891 0.003844893 5.876918 6 1.414468 0.0024321314 3.1771553 0.012020537 9.741150 7 1.414386 0.0024449696 1.1580891 0.008335825 5.887221 8 1.414234 -0.0047769762 1.5821450 0.012755240 4.845601 10 1.414406 -0.0087449774 1.2762836 0.023143403 7.648937 11 1.414562 -0.0018172910 -1.1527897 0.011081023 6.648595 13 1.418041 -0.0063490021 8.1876231 0.016326381 27.720087 14 1.418052 0.0017899630 3.3683732 0.007064470 21.974946 15 1.418262 0.0139749615 2.4386393 0.009899495 3.584672 16 1.418360 -0.0002637943 3.1850431 0.004455885 4.221465 18 1.424785 -0.0037153836 0.4481832 0.012482144 11.711315 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.156 co2l1 = 0.446 co2l0 = 0.116" [1] "co2l0 = -142.58 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "66 out of 177 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "111 out of 1247 1-min values rejected as stack air" [1] "111 out of 1247 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"