[1] "2025-04-29 19:25:31 MDT" [1] "1309" "130924" "d267" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130924a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:25:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.706" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.706" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:25:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:25:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:26:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:26:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 38 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1399 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:26:21 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.444 co2off = 376.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 163 172 0.1148380 0.1210976 0.1186635 3 -12.78913 286.7657 1.294567 3 4 173 182 0.1217929 0.1280525 0.1256184 3 33.74294 200.7005 1.294450 4 3 183 192 0.1287479 0.1350112 0.1339680 3 58.02771 125.5905 1.294422 6 4 458 467 0.3235510 0.3298102 0.3273760 2 33.59354 191.0363 1.296368 7 2 468 477 0.3305058 0.3367651 0.3343311 2 -13.10127 293.9573 1.296415 9 2 752 761 0.5322683 0.5385273 0.5360932 3 -13.19625 289.9724 1.295647 10 4 762 771 0.5392226 0.5454823 0.5430482 3 33.48985 204.1973 1.295705 11 5 772 781 0.5461777 0.5524374 0.5513940 NA 25.69934 181.4404 1.295837 12 3 782 790 0.5531325 0.5593924 0.5586968 3 57.78969 137.1270 1.295918 14 4 1045 1054 0.7409412 0.7472049 0.7447706 2 33.39404 203.7255 1.297818 15 2 1055 1062 0.7485956 0.7534639 0.7517251 2 -13.09072 291.3214 1.297832 17 2 1332 1341 0.9496944 0.9559536 0.9535193 3 -13.13889 295.7962 1.299986 18 4 1342 1350 0.9573443 0.9629086 0.9608221 3 33.29691 200.6895 1.299783 19 3 1351 1358 0.9636041 0.9691713 0.9688235 3 57.50441 117.4427 1.299581 jfcv2 co2slp o2slp co2sd o2sd 2 1.415275 -1.961951e-03 -1.45476032 0.011424218 5.465329 3 1.415157 -1.594274e-03 0.72646028 0.006549008 8.471996 4 1.415176 2.966472e-03 2.15812878 0.011360761 3.672174 6 1.416846 -5.002379e-03 0.60036389 0.014265692 6.191783 7 1.416819 -1.291418e-02 0.07507674 0.032535793 7.743013 9 1.416346 4.901964e-03 1.55928860 0.013193655 6.524359 10 1.416483 1.863989e-03 -3.53488257 0.010534167 12.049914 11 1.416438 -6.657931e-02 1.56743702 0.047155183 2.448769 12 1.416681 -3.719856e-03 7.12670163 0.010836420 7.138728 14 1.418380 -1.497060e-03 0.72007843 0.005073449 5.186972 15 1.418383 -6.755290e-03 -0.80313050 0.020704534 6.790751 17 1.420686 5.356871e-05 2.24504755 0.004102992 12.035621 18 1.420396 7.311292e-04 4.12632341 0.003459373 10.691094 19 1.420277 1.744227e-03 -1.62894642 0.009345044 1.153615 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.107 co2l1 = 0.441 co2l0 = 0.112" [1] "co2l0 = -139.64 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1223 1-min values rejected as stack air" [1] "0 out of 1223 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"