[1] "2025-04-29 19:24:41 MDT" [1] "1309" "130923" "d266" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130923a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:24:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.782, ave o2scale2 = 0.715" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "117 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.782, ave o2scale2 = 0.715" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "117 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:24:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:24:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:25:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:25:09 MDT" [1] "reading in recalculated plot titles" [1] "Removed 117 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1318 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:25:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.45 co2off = 387.64 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.8 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 101 110 0.07054716 0.07680781 0.07437353 2 34.87977 191.0489 3 2 111 120 0.07750327 0.08376273 0.08132843 2 -10.62474 287.4145 5 2 397 406 0.27923588 0.28549905 0.28306184 3 -11.03827 279.0562 6 4 407 416 0.28619450 0.29245376 0.29001985 3 34.70403 203.6381 8 3 426 435 0.30010990 0.30637341 0.30532782 3 58.52276 123.2185 11 2 635 643 0.49500292 0.50057179 0.49848336 1 -11.43975 284.3702 13 2 899 907 0.69697665 0.70324659 0.70105682 3 -12.09114 287.2009 14 4 908 914 0.70533573 0.71020972 0.70881718 3 34.16226 200.9789 15 3 915 918 0.71160313 0.71369181 0.71891644 3 58.35078 173.7167 17 4 1184 1193 0.90601273 0.91228006 0.90984267 2 33.93280 199.9750 18 2 1194 1203 0.91297650 0.91924158 0.91680513 2 -12.62473 288.8830 19 5 1204 1213 0.91993863 0.92620579 0.92516113 NA 26.03631 182.6793 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.264457 1.383704 -0.0081030108 -2.5089805 0.0234804710 10.403002 3 1.264589 1.383901 -0.0070285868 -1.3365476 0.0181083186 8.285344 5 1.270438 1.389895 0.0008584792 -1.1347356 0.0156402047 7.162240 6 1.270684 1.390138 0.0032886492 -0.2078917 0.0117814454 4.664012 8 1.271295 1.390718 -0.0032803487 -5.8280953 0.0111468204 8.118785 11 1.279583 1.399083 -0.0083880864 1.9266279 0.0187402405 14.176260 13 1.287579 1.408120 -0.0049799167 0.7413844 0.0334929441 8.630932 14 1.288024 1.408560 -0.0073344472 2.7092964 0.0123264625 4.422201 15 1.288180 1.409062 -0.0013087918 3.9040048 0.0009280777 21.599832 17 1.293081 1.413731 -0.0022823695 -0.1430937 0.0089557911 2.584624 18 1.293324 1.413953 -0.0127438122 -0.2665874 0.0352895380 6.519673 19 1.293271 1.413873 -0.0716629970 -1.4476832 0.0508232999 2.078839 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.494 co2l1 = 0.446 co2l0 = 0.1" [1] "co2l0 = -146.01 co2l1 = 0.244" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "33 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "17 out of 1145 1-min values rejected as stack air" [1] "17 out of 1145 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"