[1] "2025-04-29 19:23:52 MDT" [1] "1309" "130922" "d265" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130922a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:23:56 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.793, ave o2scale2 = 0.724" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.793, ave o2scale2 = 0.724" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:23:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:23:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:24:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:24:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1431 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:24:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.459 co2off = 378.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 38 47 0.02700026 0.03325952 0.03082535 3 -9.314609 285.7353 3 4 48 57 0.03395492 0.04021435 0.03778031 3 35.826961 201.7766 4 5 58 67 0.04090972 0.04716898 0.04612580 NA 28.770031 180.8343 5 3 68 77 0.04786464 0.05412387 0.05308087 3 59.296875 130.8741 7 4 335 344 0.23567766 0.24193750 0.23950286 2 35.743070 196.7806 8 2 345 354 0.24263310 0.24889210 0.24645786 2 -9.215734 287.5823 10 2 635 644 0.44439005 0.45066612 0.44822843 3 -9.535180 281.4477 11 4 645 654 0.45136152 0.45762115 0.45518662 3 35.544617 200.6921 12 3 655 664 0.45831646 0.46457535 0.46353231 3 58.991594 127.2407 16 4 935 944 0.65311314 0.65937269 0.65693822 2 35.467336 195.6788 17 2 945 954 0.66006829 0.66632758 0.66389329 2 -9.600797 293.7639 18 5 955 964 0.66702315 0.67328602 0.67224102 NA 28.219094 188.5808 20 2 1234 1243 0.86182998 0.86809381 0.86565830 3 -10.344742 289.9967 21 4 1244 1253 0.86878935 0.87506453 0.87263016 3 35.079531 199.8119 22 3 1254 1263 0.87575992 0.88201970 0.88097653 3 58.725539 126.5772 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.258622 1.378026 -4.970564e-03 -0.5821237 0.013248979 2.988629 3 1.258721 1.378100 5.789831e-03 -0.5542448 0.014982055 3.583730 4 1.258977 1.378353 -6.645451e-02 0.7273172 0.047066795 1.838731 5 1.258843 1.378170 -1.433709e-03 2.5608811 0.008567028 3.581683 7 1.263360 1.382664 -4.698462e-03 0.7372355 0.013470886 3.783393 8 1.263357 1.382701 1.338922e-03 -4.3107322 0.010771767 11.664607 10 1.260890 1.380110 -8.913356e-04 -2.3629601 0.004915972 11.700157 11 1.260732 1.379891 6.569573e-03 -2.0788008 0.017204146 5.438970 12 1.260605 1.379739 -5.794055e-05 -2.4800649 0.003591284 4.982719 16 1.261474 1.380637 -1.692978e-03 3.4236557 0.005768694 9.058503 17 1.261717 1.380893 -1.350103e-02 2.0690732 0.033368591 6.195981 18 1.261690 1.380957 -6.210211e-02 -3.6404477 0.043973203 4.773709 20 1.263448 1.382446 1.432556e-03 -0.9388418 0.008137863 4.672870 21 1.263505 1.382539 7.848978e-03 0.5929104 0.019790730 3.993953 22 1.263705 1.382798 -4.019376e-03 -5.5104358 0.016145057 7.518001 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.714 co2l1 = 0.455 co2l0 = 0.076" [1] "co2l0 = -140.39 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 245 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "197 out of 1220 1-min values rejected as stack air" [1] "160 out of 1162 Line 1 1-min values rejected as stack air" [1] "37 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"