[1] "2025-04-29 19:23:12 MDT" [1] "1309" "130921" "d264" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130921a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:23:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.725" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "52 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.725" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "52 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:23:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:23:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:23:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:23:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 52 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1384 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:23:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.461 co2off = 382.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.83 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 2 274 283 0.1921574 0.1984202 0.1959850 3 -8.615430 292.5954 1.267511 4 4 284 293 0.1991157 0.2053757 0.2029410 3 36.439609 199.4574 1.266657 5 3 294 303 0.2060711 0.2123301 0.2112871 3 59.813008 123.3553 1.265557 9 4 545 552 0.4022536 0.4071258 0.4053860 2 36.598104 199.7441 1.247385 10 2 553 562 0.4078212 0.4140810 0.4116464 2 -7.699828 288.4264 1.247284 11 5 563 572 0.4147765 0.4210393 0.4199952 NA 29.716938 178.2285 1.246924 14 2 824 833 0.6095625 0.6158217 0.6133874 3 -8.359445 288.9477 1.255469 15 4 834 843 0.6165171 0.6227764 0.6203421 3 36.266344 198.7458 1.255516 16 3 844 853 0.6234717 0.6297305 0.6286875 3 59.454477 124.3615 1.255655 18 4 1124 1133 0.8182586 0.8245182 0.8220839 2 36.041781 202.0575 1.258185 19 2 1134 1143 0.8252135 0.8314844 0.8290456 2 -9.001164 285.5998 1.258375 jfcv2 co2slp o2slp co2sd o2sd 3 1.387077 0.005253326 1.4486355 0.014605735 4.641467 4 1.386243 0.007348866 0.4704956 0.018424307 3.356199 5 1.385125 -0.001551994 -4.4651096 0.004790643 6.887577 9 1.366512 0.002572237 1.9582493 0.005607844 3.831089 10 1.366450 -0.006486474 0.9217348 0.022585249 3.321548 11 1.366072 -0.056033945 2.0419146 0.039686368 3.466646 14 1.374912 -0.009058920 -1.0651015 0.022974764 2.833082 15 1.374963 0.001188607 0.5997336 0.006525277 3.501833 16 1.375150 0.001348715 -1.5499750 0.008423761 2.582947 18 1.377589 -0.002704025 1.5867751 0.007652249 5.134217 19 1.377830 0.001648090 2.2058960 0.009462328 7.328311 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.206 co2l1 = 0.459 co2l0 = 0.059" [1] "co2l0 = -141.21 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "80 out of 351 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "271 out of 1221 1-min values rejected as stack air" [1] "224 out of 1106 Line 1 1-min values rejected as stack air" [1] "47 out of 115 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"