[1] "2025-04-29 19:22:27 MDT" [1] "1309" "130920" "d263" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130920a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:22:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.708" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "77 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.708" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "79 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:22:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:22:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:22:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:22:50 MDT" [1] "reading in recalculated plot titles" [1] "Removed 79 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1357 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:23:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.5" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.451 co2off = 381.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.23 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 208 217 0.1485128 0.1547720 0.1523379 2 36.564937 197.8320 1.298040 3 2 218 227 0.1554676 0.1617332 0.1592968 2 -9.437953 284.7785 1.298195 6 2 484 493 0.3572285 0.3634883 0.3610538 3 -9.461656 294.5673 1.296133 7 4 494 500 0.3662699 0.3704428 0.3690519 3 36.496200 198.4435 1.296130 8 3 501 510 0.3711381 0.3773979 0.3763547 3 60.493773 127.8507 1.295936 10 4 756 765 0.5659190 0.5721784 0.5697442 2 36.472625 202.6179 1.293236 11 2 766 771 0.5728738 0.5763550 0.5753090 2 -9.530313 291.1236 1.293031 14 2 1045 1054 0.7746551 0.7809190 0.7784839 3 -9.540898 288.1267 1.288032 15 4 1055 1061 0.7816157 0.7857894 0.7843983 3 36.328200 202.8657 1.287969 17 3 1071 1080 0.7955264 0.8017893 0.8007459 3 60.210672 132.6722 1.287304 19 4 1334 1343 0.9834774 0.9897372 0.9873029 2 36.393313 204.3807 1.283599 20 2 1344 1353 0.9904327 0.9966921 0.9942577 2 -9.143500 291.2559 1.283214 jfcv2 co2slp o2slp co2sd o2sd 2 1.419025 -0.0057343609 1.8189718 0.015126328 4.606811 3 1.419193 0.0001380644 0.7203407 0.011821484 8.286942 6 1.417046 -0.0051552410 -0.6889703 0.013272807 4.808356 7 1.417101 0.0021531825 -1.2274017 0.004961059 3.444042 8 1.416841 0.0001835742 -2.4589832 0.003427003 3.546250 10 1.413988 -0.0015378272 -0.5923057 0.004329869 3.106143 11 1.413765 -0.0125310887 -2.8110421 0.018025878 3.716545 14 1.408500 -0.0007227870 0.8758115 0.009491122 3.618299 15 1.408383 0.0099783577 -0.2054933 0.016686411 2.593110 17 1.407750 -0.0018572540 0.3125226 0.007303661 1.255717 19 1.403817 0.0040887477 0.1456097 0.011976307 5.355338 20 1.403396 0.0097645818 4.4633988 0.024456549 13.577636 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.562 co2l1 = 0.448 co2l0 = 0.076" [1] "co2l0 = -142.18 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 270 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "185 out of 1178 1-min values rejected as stack air" [1] "181 out of 1123 Line 1 1-min values rejected as stack air" [1] "4 out of 55 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"