[1] "2025-04-29 19:21:40 MDT" [1] "1309" "130919" "d262" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130919a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:21:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.712" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "48 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.778, ave o2scale2 = 0.712" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "51 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:21:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:21:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:22:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:22:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 51 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1385 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:22:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -446.9" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.6" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.445 co2off = 382.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 124 133 0.1047678 0.1110356 0.1085984 3 -9.709219 287.8474 3 4 134 142 0.1117310 0.1179914 0.1158052 3 36.786377 200.0925 4 3 143 152 0.1186868 0.1249497 0.1239066 3 61.112633 125.8098 6 4 400 409 0.3134838 0.3197431 0.3173090 2 36.776680 199.5884 7 2 410 419 0.3204387 0.3266979 0.3242638 2 -9.536008 286.2150 9 2 699 708 0.5222070 0.5284699 0.5260357 3 -10.111742 288.8840 10 4 709 718 0.5291654 0.5354247 0.5329904 3 36.565234 202.7440 11 5 719 728 0.5361201 0.5423795 0.5413362 NA 28.608344 182.1637 12 3 729 738 0.5430749 0.5493344 0.5482910 3 60.932422 129.8008 14 4 999 1008 0.7308860 0.7371472 0.7347113 2 36.368453 199.9231 15 2 1009 1018 0.7378447 0.7441161 0.7416771 2 -10.434016 288.8056 17 2 1299 1308 0.9398092 0.9460694 0.9436349 3 -9.776211 295.2157 18 4 1309 1318 0.9467647 0.9530243 0.9505899 3 36.486266 199.5370 19 3 1319 1328 0.9537199 0.9599826 0.9589395 3 60.619430 132.8391 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.279214 1.398952 -0.0022147297 -0.06610641 0.008217672 1.375432 3 1.279099 1.398791 0.0023379413 -0.34447749 0.008211753 2.022579 4 1.278884 1.398652 -0.0042994640 -0.11847916 0.012938360 3.141519 6 1.280054 1.400071 -0.0084762333 -0.06254537 0.020926488 1.836451 7 1.280114 1.400162 -0.0097843318 -0.65647188 0.026186774 2.756945 9 1.285288 1.405342 -0.0010096509 -0.11064129 0.003402408 2.747835 10 1.285622 1.405642 0.0013759064 1.93805080 0.008552800 5.808465 11 1.285913 1.405944 -0.0695802305 2.31735100 0.049276504 3.144545 12 1.285942 1.405987 -0.0079231994 -0.75719106 0.021487947 1.485346 14 1.291302 1.411566 -0.0127319047 0.27842294 0.031890626 7.912075 15 1.291387 1.411646 0.0136973519 0.32991199 0.034663928 4.304166 17 1.296396 1.417326 0.0009455416 -0.70303513 0.008340142 3.975068 18 1.296316 1.417156 0.0016461477 3.08359914 0.006173076 8.956760 19 1.296284 1.417182 0.0013747531 -5.13908352 0.006883148 6.814143 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.724 co2l1 = 0.441 co2l0 = 0.082" [1] "co2l0 = -141.52 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "70 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "145 out of 1204 1-min values rejected as stack air" [1] "145 out of 1204 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"