[1] "2025-04-29 19:20:58 MDT" [1] "1309" "130918" "d261" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130918a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:21:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.713" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "396 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.713" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "396 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:21:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:21:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:21:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:21:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 396 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1040 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:21:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.6" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.442 co2off = 386.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.51 minutes" [1] "Average Cal: 6.58 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [5,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 82 91 0.06115388 0.06741299 0.06497871 2 36.645695 199.2465 3 2 92 99 0.06880428 0.07436794 0.07251321 2 -11.176035 289.1332 5 2 312 316 0.26983194 0.27261733 0.27192055 2 -10.327917 285.7898 6 4 317 321 0.27679028 0.27957584 0.27888045 2 36.761208 200.0726 10 4 560 565 0.47863096 0.48211806 0.48107445 2 36.845781 197.3386 11 2 566 572 0.48629433 0.49046713 0.48907626 2 -9.948525 291.7812 13 2 735 744 0.68735240 0.69361137 0.69117738 2 -9.853398 291.7530 14 4 745 752 0.69430700 0.69917561 0.69743685 2 36.828427 199.3394 17 4 928 932 0.89608545 0.90234488 0.90049014 2 36.932695 198.0739 18 2 933 939 0.90373568 0.90929977 0.90735210 2 -9.292700 292.5311 19 5 940 949 0.90999540 0.91625463 0.91521125 NA 29.071937 187.4646 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.288684 1.408493 -0.007508597 0.09777512 0.018918748 0.6186021 3 1.288466 1.408440 -0.007405869 -2.58164381 0.017632327 6.7139247 5 1.286985 1.406676 -0.008466447 -4.16726098 0.008578073 4.2327442 6 1.287666 1.407377 0.007864291 -6.60634610 0.009278952 6.8240945 10 1.283106 1.402676 -0.007911415 0.27410116 0.010790199 0.3963983 11 1.282755 1.402689 -0.005491737 -0.45062621 0.008955140 2.1007071 13 1.281280 1.400766 0.006712792 -1.29530603 0.017610745 8.5680671 14 1.281109 1.400563 0.009109162 3.11531230 0.019549193 6.5291499 17 1.277919 1.397319 0.004500652 1.45307780 0.017660669 5.5584924 18 1.278495 1.398113 0.013939915 -1.47736306 0.036488906 5.3556792 19 1.278783 1.398353 -0.060773710 0.26342257 0.043045125 2.1178403 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.767 co2l1 = 0.44 co2l0 = 0" [1] "co2l0 = -140.27 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "53 out of 396 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "343 out of 891 1-min values rejected as stack air" [1] "343 out of 891 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"