[1] "2025-04-29 19:19:54 MDT" [1] "1309" "130917" "d260" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130917a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:19:58 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.709" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.709" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:19:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:19:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:20:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:20:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1431 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:20:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.6" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.434 co2off = 379.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 25 34 0.01761970 0.02388374 0.02144636 3 -10.55512 288.2245 3 4 35 44 0.02457920 0.03084233 0.02840577 3 36.94552 204.6663 4 5 45 54 0.03153770 0.03779740 0.03675396 NA 28.99209 184.8499 5 3 55 64 0.03849282 0.04475237 0.04370905 3 61.66603 130.8569 8 4 325 334 0.22631528 0.23257451 0.23014046 2 36.93345 199.9356 9 2 335 344 0.23326994 0.23952943 0.23709538 2 -10.62288 285.9984 12 2 622 631 0.43501030 0.44127315 0.43883651 3 -10.78369 286.7898 13 4 632 641 0.44196869 0.44822772 0.44579346 3 36.79574 198.3777 14 3 642 651 0.44892300 0.45518200 0.45413896 3 61.69698 126.8539 16 4 922 931 0.64371172 0.64997454 0.64753723 2 36.86532 202.5340 17 2 932 941 0.65067014 0.65692917 0.65449505 2 -10.77720 290.2339 18 5 942 951 0.65762471 0.66388423 0.66284095 NA 28.46603 185.2012 20 2 1222 1231 0.85246412 0.85872338 0.85628935 3 -10.88658 291.2607 21 4 1232 1241 0.85941898 0.86568186 0.86324750 3 36.80505 200.6779 22 3 1242 1251 0.86637731 0.87263660 0.87159363 3 61.70323 124.3125 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.289935 1.409407 1.013889e-02 -0.64213600 0.025325855 2.102728 3 1.289792 1.409263 7.254776e-04 0.56068085 0.015077809 3.058720 4 1.289695 1.409151 -6.107299e-02 -1.59717100 0.043266096 2.492463 5 1.289457 1.408901 -9.196102e-05 2.37486196 0.006980521 3.137208 8 1.290261 1.409936 -7.213256e-03 0.48719036 0.019287777 2.227188 9 1.290215 1.409917 -1.955111e-03 0.39332261 0.013802335 2.073609 12 1.290469 1.410618 -3.939156e-03 -0.08546467 0.010737794 1.228998 13 1.290290 1.410495 1.956013e-03 0.82478800 0.007736411 2.604495 14 1.290092 1.410332 3.989218e-03 3.20680119 0.015826379 4.602057 16 1.291946 1.412177 -1.909801e-03 0.05485990 0.008982587 3.343579 17 1.292039 1.412266 -5.573625e-03 1.16175090 0.015202750 4.158244 18 1.291925 1.412172 -7.419194e-02 -0.59038071 0.052546873 1.597559 20 1.291040 1.411177 -6.865467e-04 -1.39719291 0.005829684 3.533390 21 1.290800 1.410914 6.695640e-04 0.24772962 0.012818433 1.991739 22 1.290639 1.410738 9.830170e-05 -1.56438176 0.009121070 2.036276 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.974 co2l1 = 0.431 co2l0 = 0.088" [1] "co2l0 = -141.7 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 290 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "234 out of 1218 1-min values rejected as stack air" [1] "228 out of 423 Line 1 1-min values rejected as stack air" [1] "6 out of 795 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"