[1] "2025-04-29 19:18:09 MDT" [1] "1309" "130915" "d258" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130915a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:18:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.698" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "37 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.761, ave o2scale2 = 0.698" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "37 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:18:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:18:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:18:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:18:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1399 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:19:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.6" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.42 co2off = 383.09 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 197 206 0.1392269 0.1454861 0.1430522 2 36.39442 196.1143 1.311698 3 2 207 216 0.1461817 0.1524410 0.1500071 2 -13.05789 291.8908 1.311559 4 5 217 226 0.1531366 0.1593997 0.1583567 NA 28.28422 183.2159 1.311327 6 2 483 491 0.3479503 0.3535146 0.3514280 3 -13.18261 295.5769 1.312756 7 4 492 497 0.3556007 0.3611647 0.3601213 3 36.20971 203.7410 1.312993 8 3 498 507 0.3618600 0.3681213 0.3670776 3 62.10069 128.7024 1.312860 10 4 776 784 0.5566333 0.5628928 0.5605084 2 36.10536 202.7106 1.315822 11 2 785 794 0.5635881 0.5698509 0.5674161 2 -13.44163 291.2068 1.315858 13 2 1073 1082 0.7653099 0.7715693 0.7691352 3 -12.84320 287.6219 1.314690 14 4 1083 1092 0.7722648 0.7785241 0.7760899 3 36.23853 202.1962 1.314584 15 5 1093 1102 0.7792194 0.7854823 0.7844391 NA 28.18222 183.8580 1.314371 16 3 1103 1112 0.7861776 0.7924370 0.7913939 3 61.90487 126.5820 1.314070 18 4 1363 1372 0.9740650 0.9803284 0.9778919 2 36.39120 201.9124 1.313758 19 2 1373 1382 0.9810237 0.9872835 0.9848490 2 -12.48883 287.5841 1.313748 jfcv2 co2slp o2slp co2sd o2sd 2 1.429535 0.002508398 2.957021609 0.008170870 8.716821 3 1.429410 -0.001933450 0.880122252 0.014041939 4.957294 4 1.429196 -0.059862672 -1.309460565 0.042382213 2.210882 6 1.431012 -0.013040086 0.324702996 0.031422746 3.287224 7 1.431319 0.001666947 -0.002227119 0.002484583 1.064452 8 1.431198 0.002780610 -3.821290658 0.007820389 5.329123 10 1.434432 -0.005574333 0.440435354 0.017540478 3.725284 11 1.434525 0.003878377 0.814312348 0.012513876 2.847920 13 1.433496 -0.001510573 1.884574054 0.007167592 5.285002 14 1.433402 0.007806697 -0.352237450 0.022091960 3.546024 15 1.433192 -0.063855021 0.792345539 0.045210640 1.058328 16 1.432898 -0.002627693 -0.998720165 0.008091996 1.899465 18 1.432751 0.001101969 0.516953016 0.005985916 2.938123 19 1.432751 0.003243236 -0.818964053 0.012946307 3.961328 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.764 co2l1 = 0.417 co2l0 = 0.116" [1] "co2l0 = -140.99 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "18 out of 55 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "37 out of 1213 1-min values rejected as stack air" [1] "37 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"