[1] "2025-04-29 19:17:44 MDT" [1] "1309" "130914" "d257" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130914a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 42660 63 [1] 42660 [1] 42660 [1] "testing skipping spike filter" [1] 42660 [1] 42660 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:17:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.762, ave o2scale2 = 0.699" [1] "Removing 2 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "23 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.762, ave o2scale2 = 0.699" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:17:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:17:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:17:57 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:17:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 46 manually filtered row(s) from a screenall period" [1] "TEMP: 642 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:18:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.6" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.417 co2off = 379.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 3 2 265 274 0.7287248 0.7349877 0.7325536 1 -13.12016 272.8330 1.312603 5 2 543 552 0.9305454 0.9368194 0.9343804 3 -13.04749 286.6588 1.312719 6 4 553 562 0.9375148 0.9437742 0.9413398 3 36.46302 170.6634 1.312451 7 3 563 572 0.9444695 0.9507315 0.9496883 3 62.56159 119.4059 1.312387 jfcv2 co2slp o2slp co2sd o2sd 3 1.429864 0.0001166437 3.4987990 0.002244521 12.989493 5 1.430201 0.0006526188 -0.2819107 0.012645115 3.220547 6 1.429956 0.0340245281 9.3008338 0.098719908 25.836048 7 1.429902 0.0044476979 0.5702812 0.019217389 1.859721 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.732 co2l1 = 0.411 co2l0 = 0.132" [1] "co2l0 = -133.92 co2l1 = 0.208" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "49 out of 180 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "131 out of 575 1-min values rejected as stack air" [1] "131 out of 575 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"