[1] "2017-04-06 01:12:39 MDT"
[1] "1309"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1309/130914.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1309/130915.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1309/130916.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1309/130917.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1309/130918.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1309/130919.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1309/130920.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1309/130921.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1309/130922.html"  
[10] "/net/www/docs/homes/stephens/GO2/1309/130923.html"  
[11] "/net/www/docs/homes/stephens/GO2/1309/130924.html"  
[12] "/net/www/docs/homes/stephens/GO2/1309/130925.html"  
[13] "/net/www/docs/homes/stephens/GO2/1309/130926.html"  
[14] "/net/www/docs/homes/stephens/GO2/1309/lmg_1309.html"
 [1] "/net/www/docs/homes/stephens/GO2/1309/130914.html"
 [2] "/net/www/docs/homes/stephens/GO2/1309/130915.html"
 [3] "/net/www/docs/homes/stephens/GO2/1309/130916.html"
 [4] "/net/www/docs/homes/stephens/GO2/1309/130917.html"
 [5] "/net/www/docs/homes/stephens/GO2/1309/130918.html"
 [6] "/net/www/docs/homes/stephens/GO2/1309/130919.html"
 [7] "/net/www/docs/homes/stephens/GO2/1309/130920.html"
 [8] "/net/www/docs/homes/stephens/GO2/1309/130921.html"
 [9] "/net/www/docs/homes/stephens/GO2/1309/130922.html"
[10] "/net/www/docs/homes/stephens/GO2/1309/130923.html"
[11] "/net/www/docs/homes/stephens/GO2/1309/130924.html"
[12] "/net/www/docs/homes/stephens/GO2/1309/130925.html"
[13] "/net/www/docs/homes/stephens/GO2/1309/130926.html"
[1] "130914" "130926"
 [1] "130914" "130915" "130916" "130917" "130918" "130919" "130920" "130921"
 [9] "130922" "130923" "130924" "130925" "130926"
[1] "000000" "999999"
[1] "130914_mr_proc.txt, 130914_cal_periods.txt, 130914_cal_param.txt,642jogs"
[1] "130915_mr_proc.txt, 130915_cal_periods.txt, 130915_cal_param.txt,1399jogs"
[1] "130916_mr_proc.txt, 130916_cal_periods.txt, 130916_cal_param.txt,1422jogs"
[1] "130917_mr_proc.txt, 130917_cal_periods.txt, 130917_cal_param.txt,1431jogs"
[1] "130918_mr_proc.txt, 130918_cal_periods.txt, 130918_cal_param.txt,1040jogs"
[1] "130919_mr_proc.txt, 130919_cal_periods.txt, 130919_cal_param.txt,1385jogs"
[1] "130920_mr_proc.txt, 130920_cal_periods.txt, 130920_cal_param.txt,1357jogs"
[1] "130921_mr_proc.txt, 130921_cal_periods.txt, 130921_cal_param.txt,1384jogs"
[1] "130922_mr_proc.txt, 130922_cal_periods.txt, 130922_cal_param.txt,1431jogs"
[1] "130923_mr_proc.txt, 130923_cal_periods.txt, 130923_cal_param.txt,1318jogs"
[1] "130924_mr_proc.txt, 130924_cal_periods.txt, 130924_cal_param.txt,1399jogs"
[1] "130925_mr_proc.txt, 130925_cal_periods.txt, 130925_cal_param.txt,1423jogs"
[1] "130926_mr_proc.txt, 130926_cal_periods.txt, 130926_cal_param.txt,1212jogs"
[1] "130914" "130926" "d257"   "d269"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 01:13:02 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.709"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 01:13:17 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 01:13:40 MDT"
[1] "2017-04-06 01:13:46 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -452.4"
[1] "position 2 cylinder CB08911 description: MS CO2 = 405.13 O2 = -631.9"
[1] "position 3 cylinder CB08905 description: LS CO2 = 394.79 O2 = -549.1"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.89 O2 = -579.1"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Plotting jog shapes"
[1] "1309 Valve transient for  Line 1 after Line 2 = 0.42 , 0.7 , 1.17 , 1.49 , 0.6 n = 3"
[1] "1309 Valve transient for  Line 1 after Cal = 0.11 , 0.11 , 0.03 , 0.04 , 0.04 n = 49"
[1] "1309 Valve transient for  Line 2 after Line 1 = 26.44 , 17.91 , 4.69 , 0.08 , 0.05 n = 3"
[1] "1309 Valve transient for  Line 2 after Cal = -0.35 , -0.19 , -0.04 , -0.02 , -0.01 n = 4"
[1] "1309 Valve transient for  Line 1 after HS = -1.36 , -0.63 , 0.02 , 0.01 , 0.02 n = 16"
[1] "1309 Valve transient for  Line 1 after MS = 1.01 , 0.55 , 0.07 , 0.08 , 0.06 n = 25"
[1] "1309 Valve transient for  Line 1 after LT = -2.71 , -2.21 , -1.36 , -0.5 , -0.11 n = 8"
[1] "1309 Valve transient for  Line 2 after HS = -1.45 , -0.75 , -0.05 , -0.04 , -0.03 n = 1"
[1] "1309 Valve transient for  Line 2 after MS = 0.78 , 0.38 , -0.02 , -0.02 , -0.01 n = 2"
[1] "1309 Valve transient for  Line 2 after LT = -3.35 , -2.52 , -0.86 , 0.22 , 0.64 n = 1"
[1] "1309 Valve transient for  HS after Line 1 = 1.22 , 0.61 , 0 , 0 , 0 n = 19"
[1] "1309 Valve transient for  HS after Line 2 = 1.24 , 0.63 , 0 , 0 , -0.01 n = 7"
[1] "1309 Valve transient for  HS after LS = 3.57 , 1.8 , 0.01 , 0 , 0 n = 23"
[1] "1309 Valve transient for  MS after LS = -1.73 , -0.86 , -0.01 , 0 , 0 n = 17"
[1] "1309 Valve transient for  MS after LT = -1.82 , -0.9 , -0.01 , 0 , 0 n = 7"
[1] "1309 Valve transient for  LS after Line 1 = 0.99 , 0.51 , 0.01 , 0 , 0 n = 22"
[1] "1309 Valve transient for  LS after Line 2 = 1.02 , 0.51 , 0 , -0.01 , -0.01 n = 2"
[1] "1309 Valve transient for  LS after HS = -3.42 , -1.71 , -0.01 , 0 , 0 n = 21"
[1] "1309 Valve transient for  LT after HS = -0.73 , -0.12 , 0.42 , 0.36 , 0.28 n = 9"
[1] "1309 Valve transient for  LT after LS = 0.76 , 0.62 , 0.44 , 0.36 , 0.29 n = 6"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "193 out of 2965 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "2772 out of 14639 1-min values rejected as stack air"
[1] "2590 out of 12757 Line 1 1-min values rejected as stack air"
[1] "182 out of 1882 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1309loxy.d257"
[1] "LMG1309loxy.d258"
[1] "LMG1309loxy.d259"
[1] "LMG1309loxy.d260"
[1] "LMG1309loxy.d261"
[1] "LMG1309loxy.d262"
[1] "LMG1309loxy.d265"
[1] "LMG1309loxy.d266"
[1] "LMG1309loxy.d267"
[1] "LMG1309loxy.d268"
[1] "LMG1309loxy.d269"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,] 102.5 0.8982036
 [2,] 112.5 0.2994012
 [3,] 117.5 1.1976048
 [4,] 122.5 0.5988024
 [5,] 157.5 0.2994012
 [6,] 162.5 0.5988024
 [7,] 182.5 0.2994012
 [8,] 207.5 0.2994012
 [9,] 212.5 0.8982036
[10,] 217.5 1.4970060
[11,] 222.5 0.2994012
[12,] 227.5 0.5988024
[13,] 232.5 1.7964072
[14,] 237.5 0.2994012
[15,] 242.5 0.5988024
[16,] 247.5 0.2994012
[17,] 252.5 0.5988024
[18,] 257.5 1.4970060
[19,] 262.5 0.2994012
[20,] 267.5 0.2994012
[21,] 277.5 0.5988024
[22,] 282.5 0.2994012
[23,] 287.5 1.1976048
[24,] 292.5 1.4970060
[25,] 297.5 0.8982036
[26,] 302.5 0.5988024
[27,] 312.5 0.8982036
[28,] 317.5 0.8982036
[29,] 322.5 0.8982036
[30,] 327.5 1.1976048
[31,] 332.5 1.1976048
[32,] 337.5 2.3952096
[33,] 342.5 1.7964072
[34,] 347.5 0.8982036
[35,] 352.5 0.8982036
[36,] 357.5 0.5988024
[37,] 362.5 1.4970060
[38,] 367.5 1.4970060
[39,] 372.5 1.4970060
[40,] 377.5 2.0958084
[41,] 382.5 2.0958084
[42,] 387.5 2.6946108
[43,] 392.5 2.0958084
[44,] 397.5 2.6946108
[45,] 402.5 0.8982036
[46,] 407.5 0.8982036
[47,] 412.5 0.2994012
[48,] 432.5 0.2994012
[49,] 437.5 0.2994012
       [,1]      [,2]
 [1,] 117.5 0.2994012
 [2,] 122.5 0.5988024
 [3,] 212.5 0.2994012
 [4,] 217.5 0.8982036
 [5,] 222.5 0.5988024
 [6,] 227.5 1.1976048
 [7,] 232.5 1.4970060
 [8,] 237.5 2.9940120
 [9,] 242.5 1.4970060
[10,] 247.5 1.1976048
[11,] 252.5 0.8982036
[12,] 257.5 0.8982036
[13,] 262.5 2.9940120
[14,] 267.5 0.8982036
[15,] 272.5 0.5988024
[16,] 277.5 0.8982036
[17,] 282.5 1.1976048
[18,] 287.5 0.8982036
[19,] 292.5 0.2994012
[20,] 297.5 0.5988024
[21,] 307.5 0.5988024
[22,] 312.5 0.5988024
[23,] 322.5 0.2994012
[24,] 327.5 1.7964072
[25,] 332.5 2.9940120
[26,] 337.5 1.7964072
[27,] 342.5 1.1976048
[28,] 347.5 0.5988024
[29,] 352.5 0.5988024
[30,] 357.5 0.5988024
[31,] 362.5 0.2994012
[32,] 377.5 0.2994012
[33,] 387.5 0.2994012
[34,] 397.5 0.5988024
[35,] 402.5 0.2994012
[36,] 412.5 0.2994012
[37,] 417.5 0.0000000
[38,] 437.5 0.2994012
[39,] 447.5 0.0000000
       [,1]      [,2]
 [1,] 227.5 0.2994012
 [2,] 232.5 0.2994012
 [3,] 237.5 0.8982036
 [4,] 242.5 0.2994012
 [5,] 247.5 1.1976048
 [6,] 252.5 1.1976048
 [7,] 257.5 0.5988024
 [8,] 262.5 0.2994012
 [9,] 332.5 1.7964072
[10,] 357.5 0.2994012
[11,] 367.5 0.5988024
[12,] 372.5 0.5988024
[13,] 397.5 0.2994012
[14,] 417.5 0.2994012
       [,1]      [,2]
 [1,] 242.5 0.5988024
 [2,] 252.5 0.2994012
 [3,] 262.5 0.2994012
 [4,] 267.5 0.5988024
 [5,] 272.5 0.8982036
 [6,] 347.5 0.2994012
 [7,] 357.5 0.2994012
 [8,] 377.5 0.2994012
 [9,] 382.5 0.2994012
[10,] 387.5 0.5988024
[11,] 397.5 0.5988024
[12,] 402.5 0.8982036
[13,] 407.5 0.5988024
[14,] 417.5 0.2994012
[15,] 427.5 0.2994012
[1] "making cruise html"
[1] "2017-04-06 01:14:15 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"