[1] "2025-04-29 19:10:56 MDT" [1] "1306" "130702" "d183" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130702a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:11:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.714" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "163 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.771, ave o2scale2 = 0.714" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "164 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:11:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:11:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:11:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:11:24 MDT" [1] "reading in recalculated plot titles" [1] "Removed 164 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1271 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:11:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.5" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.9" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.306 co2off = 369.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.19 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 4 225 234 0.1573059 0.1635689 0.1611337 2 50.11688 158.62183 5 2 235 244 0.1642641 0.1705271 0.1680926 2 -17.47086 245.47999 9 2 525 534 0.3660634 0.3723309 0.3698955 3 -17.20322 248.59989 10 4 535 544 0.3730301 0.3793160 0.3768745 3 50.27173 144.58759 11 3 545 554 0.3800128 0.3862755 0.3852306 3 85.46994 88.54769 13 4 824 833 0.5750884 0.5813512 0.5789147 2 50.49516 158.29935 14 2 834 843 0.5820466 0.5883059 0.5858718 2 -16.81595 245.43104 18 4 1093 1100 0.7908091 0.7970718 0.7948685 2 50.89692 157.66597 19 3 1101 1109 0.7977674 0.8040301 0.8031016 2 85.81566 88.57058 21 4 1263 1271 0.9926438 0.9989074 0.9968191 1 50.51797 159.27982 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.302789 1.405349 0.003099256 0.46091260 0.01085335 3.601332 5 1.302863 1.405401 0.003962567 -0.07454032 0.01557595 3.374818 9 1.301718 1.404283 -0.004977061 1.18979462 0.01447053 3.832581 10 1.301725 1.404330 0.005641486 -8.31208011 0.01556319 26.696898 11 1.301324 1.404003 0.001942284 -0.20162867 0.01002686 2.162466 13 1.297989 1.400685 -0.004361583 2.04793054 0.01312096 6.295475 14 1.297859 1.400557 0.008932036 1.60227086 0.03168505 4.525212 18 1.292883 1.395335 -0.005361321 -3.35486514 0.01625803 8.557690 19 1.292741 1.395263 -0.005262978 -1.02177075 0.01556882 1.657026 21 1.289029 1.391086 0.012501775 -0.91256286 0.02783047 2.486177 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.716 co2l1 = 0.302 co2l0 = 0.101" [1] "co2l0 = -132.25 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "129 out of 555 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "426 out of 1110 1-min values rejected as stack air" [1] "339 out of 994 Line 1 1-min values rejected as stack air" [1] "87 out of 116 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"