[1] "2025-04-29 19:10:13 MDT" [1] "1306" "130701" "d182" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130701a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:10:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.71" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "120 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.71" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "120 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:10:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:10:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:10:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:10:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 120 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with LiCO2A spikes in them" [1] "TEMP: 1310 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:10:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -624.9" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.304 co2off = 383.09 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.06 minutes" [1] "Average Cal: 8.58 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 144 153 0.1136541 0.1199179 0.1174820 2 -18.20817 247.39421 3 4 154 163 0.1206134 0.1268766 0.1244401 2 49.68180 158.60988 9 4 399 405 0.3224070 0.3286701 0.3268609 2 49.71612 156.65180 10 2 406 414 0.3293655 0.3356285 0.3330444 2 -18.18693 241.77440 13 2 652 661 0.5313068 0.5375984 0.5351515 3 -18.23958 239.94704 14 4 662 671 0.5382975 0.5445891 0.5421422 3 49.67048 158.17122 15 3 672 681 0.5452923 0.5515833 0.5505350 3 85.21984 88.46999 18 4 940 949 0.7398294 0.7461236 0.7436756 2 49.97589 159.79742 19 2 950 959 0.7468229 0.7531169 0.7506686 2 -17.56571 245.36677 21 2 1238 1247 0.9482882 0.9545834 0.9521330 3 -17.84856 243.31933 22 4 1248 1257 0.9552833 0.9615743 0.9591276 3 49.88241 156.40308 24 3 1267 1276 0.9692670 0.9755660 0.9745178 3 85.40412 84.35050 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.307251 1.409588 0.0149291667 0.56932419 0.037400728 3.620218 3 1.306767 1.409132 0.0106798087 0.92219942 0.027208898 2.819936 9 1.303776 1.406061 -0.0012344761 0.07897707 0.003898764 2.900853 10 1.303797 1.406034 -0.0032107478 -0.91591996 0.017309398 3.574662 13 1.306053 1.408369 0.0009490246 -1.96128171 0.014538962 12.434280 14 1.306075 1.408449 -0.0040348833 0.50277958 0.013424805 2.817019 15 1.306035 1.408424 0.0052695267 -1.07778875 0.015624962 2.158023 18 1.307218 1.409833 -0.0024310322 -0.77900848 0.012227008 3.931914 19 1.307276 1.409957 0.0080986248 1.08230688 0.021292210 6.024904 21 1.304587 1.407171 -0.0223070366 -1.24828799 0.055973018 3.704919 22 1.304376 1.406963 0.0099073942 1.17865693 0.027652276 4.620949 24 1.304856 1.407434 0.0051042049 0.79843332 0.013131758 1.257357 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.799 co2l1 = 0.303 co2l0 = 0.117" [1] "co2l0 = -132.9 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "97 out of 526 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "429 out of 1111 1-min values rejected as stack air" [1] "373 out of 840 Line 1 1-min values rejected as stack air" [1] "56 out of 271 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"