[1] "2025-04-29 19:09:05 MDT" [1] "1306" "130629" "d180" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130629a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:09:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.711" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "90 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.711" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "92 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:09:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:09:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:09:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:09:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 92 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1344 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:09:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.305 co2off = 383.33 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 147 156 0.1114520 0.1177219 0.1152830 3 -18.45637 245.97048 3 4 157 166 0.1184177 0.1246769 0.1222426 3 49.25813 160.55860 4 5 167 176 0.1253723 0.1316354 0.1305920 NA 39.29078 137.90814 5 3 177 186 0.1323309 0.1385937 0.1375503 3 84.59930 90.05685 7 4 427 436 0.3202399 0.3265040 0.3240689 2 49.14614 158.58525 8 2 437 446 0.3272049 0.3334665 0.3310321 2 -18.74683 246.91074 10 2 713 722 0.5290081 0.5352709 0.5328365 3 -18.51023 249.52134 11 4 723 732 0.5359665 0.5422380 0.5398007 3 49.30202 157.47286 12 3 733 742 0.5429333 0.5492080 0.5481648 3 84.67749 86.48064 14 4 993 1001 0.7384713 0.7440357 0.7419490 2 49.00094 160.21702 15 2 1002 1011 0.7447310 0.7509899 0.7485559 2 -18.88019 252.24944 16 5 1012 1021 0.7516854 0.7579453 0.7569021 NA 39.34747 149.46027 18 2 1271 1280 0.9465581 0.9528217 0.9503852 3 -19.27083 246.18862 19 4 1281 1290 0.9535172 0.9597801 0.9573451 3 49.16909 157.36260 20 3 1291 1300 0.9604757 0.9667385 0.9656955 3 84.85384 84.37036 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.300712 1.404309 0.0038392759 -0.47174410 0.013483556 2.915986 3 1.300641 1.404224 -0.0066739003 0.67502023 0.021853036 2.529382 4 1.300847 1.404401 -0.0664517471 0.76175959 0.047066795 1.536339 5 1.300949 1.404613 -0.0002628303 -1.32248965 0.008549015 1.942607 7 1.301164 1.404560 -0.0009181842 0.46310716 0.011112742 2.231951 8 1.300885 1.404276 0.0106631491 -1.77614647 0.029089067 4.810543 10 1.302370 1.406195 0.0084154848 -0.94751430 0.022527457 2.713905 11 1.302527 1.406278 0.0040255071 -1.05891553 0.014132462 3.878065 12 1.302214 1.405946 -0.0036452077 -0.06674758 0.012323823 0.119222 14 1.304043 1.407885 0.0183698796 1.01428566 0.039837087 2.726222 15 1.304459 1.408341 0.0393647618 4.09736939 0.096928436 12.841095 16 1.304564 1.408456 -0.0666014731 6.59151679 0.047155183 10.167065 18 1.305889 1.409862 0.0241717811 0.70158705 0.060235844 5.098016 19 1.305809 1.409724 0.0156140497 0.37457856 0.040408420 5.572676 20 1.305703 1.409652 0.0061301466 -0.12211951 0.016451937 0.892378 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.018 co2l1 = 0.302 co2l0 = 0.11" [1] "co2l0 = -131.85 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "34 out of 90 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "56 out of 1138 1-min values rejected as stack air" [1] "56 out of 1138 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"