[1] "2025-04-29 19:06:21 MDT" [1] "1306" "130625" "d176" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130625a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:06:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.79, ave o2scale2 = 0.732" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "168 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.79, ave o2scale2 = 0.732" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "169 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:06:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:06:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:06:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:06:43 MDT" [1] "reading in recalculated plot titles" [1] "Removed 169 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1267 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:06:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.313 co2off = 388.69 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 188 193 0.1444918 0.1479719 0.1469263 2 49.59478 158.48416 3 2 194 203 0.1514502 0.1577130 0.1552767 2 -16.21272 246.76851 5 2 456 465 0.3532698 0.3595330 0.3570986 3 -15.98030 245.75990 6 4 466 475 0.3602284 0.3664919 0.3640542 3 49.83315 157.18721 8 3 483 492 0.3741528 0.3804120 0.3793687 3 83.99245 86.85537 10 4 726 732 0.5620210 0.5682836 0.5668929 2 49.52046 157.55070 11 2 733 742 0.5689823 0.5752420 0.5728080 2 -16.72591 244.08903 13 2 984 993 0.7707554 0.7770184 0.7745820 2 -16.25855 244.55074 14 4 994 1003 0.7777137 0.7839767 0.7815401 2 49.50401 160.02011 17 4 1244 1250 0.9795185 0.9857813 0.9831363 2 49.42987 160.59837 18 2 1251 1260 0.9864769 0.9927396 0.9903050 2 -17.01324 251.33836 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.262320 1.362935 -0.0161610517 0.0450261 0.022212545 1.451835 3 1.262275 1.362874 -0.0101708613 -0.1707983 0.027789346 2.225193 5 1.262438 1.363034 0.0132493006 -0.1145489 0.033898841 1.755010 6 1.262436 1.363059 0.0107658157 0.3262204 0.035238979 1.433183 8 1.262180 1.362743 -0.0001671725 0.3065700 0.003781776 0.677443 10 1.264671 1.365408 -0.0182886939 0.1008734 0.033222192 1.022216 11 1.264842 1.365594 -0.0233892450 -0.8728751 0.060092015 2.775430 13 1.270077 1.371192 -0.0266600422 0.2238679 0.065966132 2.304378 14 1.269983 1.371069 -0.0099153501 0.7648992 0.029574728 3.610046 17 1.275162 1.376702 -0.0029356495 -2.0913258 0.010259999 6.836686 18 1.275530 1.377131 0.0011496456 0.6782742 0.017265988 6.974633 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.459 co2l1 = 0.312 co2l0 = 0.082" [1] "co2l0 = -132.72 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "44 out of 190 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "146 out of 1114 1-min values rejected as stack air" [1] "146 out of 1114 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"