[1] "2025-04-29 19:05:41 MDT" [1] "1306" "130624" "d175" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130624a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:05:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.735" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "73 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.794, ave o2scale2 = 0.735" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "75 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:05:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:05:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:06:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:06:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 75 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1357 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:06:16 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.6" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.315 co2off = 375.57 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.06 minutes" [1] "Average Cal: 8.78 minutes" [1] "Shortest Cal: 5.03 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 144 153 0.1015544 0.1078171 0.1053829 3 -16.07153 247.90543 3 4 154 163 0.1085127 0.1147720 0.1123380 3 49.52995 157.77847 4 5 164 173 0.1154676 0.1217305 0.1206876 NA 39.90350 142.41949 5 3 174 183 0.1224259 0.1286890 0.1276460 3 83.76089 77.63270 7 4 439 448 0.3103386 0.3166014 0.3141668 2 49.43396 156.49615 8 2 449 458 0.3172967 0.3235595 0.3211255 2 -16.55955 248.48579 10 2 722 731 0.5189329 0.5252259 0.5227786 3 -16.08584 248.76228 11 4 732 741 0.5259259 0.5322231 0.5297751 3 49.58237 157.43061 12 3 742 751 0.5329225 0.5392325 0.5381799 3 83.66314 87.35718 14 4 1002 1011 0.7274167 0.7337095 0.7312626 2 49.28813 156.97771 15 2 1012 1017 0.7344097 0.7379049 0.7368564 2 -16.82058 246.17169 16 5 1018 1027 0.7414032 0.7477025 0.7466492 NA 39.36541 139.80552 18 2 1274 1283 0.9359141 0.9422106 0.9397622 2 -16.32684 245.93707 19 4 1284 1293 0.9429107 0.9492043 0.9467563 2 49.49082 160.00570 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.252906 1.353320 0.004009900 1.33853965 0.013415701 4.118610 3 1.253168 1.353606 0.003964210 0.55859124 0.020186475 2.039712 4 1.253710 1.354188 -0.063665113 1.92290172 0.045078057 2.529687 5 1.254095 1.354605 0.005435736 -4.94609087 0.013588777 7.071710 7 1.260123 1.360898 -0.014002653 -0.54689101 0.034976282 5.617654 8 1.260104 1.360885 -0.050898022 -0.05622955 0.125340730 1.837488 10 1.262382 1.363243 0.041519447 0.32057250 0.103031939 2.511882 11 1.262318 1.363183 0.012424329 1.39153356 0.033856660 3.869494 12 1.262041 1.362891 -0.006056201 2.37385660 0.016050484 3.323926 14 1.263016 1.363855 -0.012974829 0.84662385 0.036185734 2.426379 15 1.262915 1.363750 -0.037970660 1.60045794 0.051368419 2.315599 16 1.262918 1.363709 -0.081662421 2.30815013 0.058557280 3.052028 18 1.263300 1.364066 -0.001937722 -0.30268298 0.007158833 3.513429 19 1.263191 1.363957 0.006236176 1.02457564 0.017376556 4.559874 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.453 co2l1 = 0.312 co2l0 = 0.087" [1] "co2l0 = -131.32 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "27 out of 128 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "101 out of 1158 1-min values rejected as stack air" [1] "101 out of 1158 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"