[1] "2025-04-29 19:00:51 MDT" [1] "1306" "130617" "d168" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130617a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:00:55 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.786, ave o2scale2 = 0.728" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.786, ave o2scale2 = 0.728" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:00:55 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:00:55 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:01:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:01:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1418 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:01:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.304 co2off = 380.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 266 275 0.1865448 0.1928079 0.1903710 3 -21.55095 244.71589 3 4 276 285 0.1935034 0.1997662 0.1973303 3 46.27365 162.53367 4 3 286 295 0.2004618 0.2067245 0.2056813 3 81.71582 87.68541 7 4 565 574 0.3953218 0.4015825 0.3991485 2 46.44183 157.10866 8 2 575 584 0.4022779 0.4085410 0.4061069 2 -21.28023 247.84909 9 5 585 594 0.4092364 0.4155000 0.4144566 NA 35.69128 140.60767 11 2 858 867 0.6040498 0.6103129 0.6078774 3 -21.77296 244.68926 12 4 868 877 0.6110084 0.6172710 0.6148364 3 46.36243 158.79727 13 3 878 887 0.6179664 0.6242267 0.6231834 3 81.77045 84.99987 15 4 1154 1163 0.8127975 0.8190602 0.8166259 2 45.85023 154.31629 16 2 1164 1173 0.8197558 0.8260151 0.8235811 2 -22.50912 246.98594 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.266543 1.366952 -0.0045507011 -0.1555085 0.021544020 1.779842 3 1.266556 1.366976 0.0103356488 0.4093281 0.026616320 6.585603 4 1.266471 1.366921 0.0066011269 1.4756765 0.016792870 1.945175 7 1.268702 1.369602 0.0023656005 0.6847143 0.008692525 2.694448 8 1.268524 1.369402 -0.0213212623 1.0937754 0.052937104 2.982279 9 1.268237 1.369092 -0.0916597338 -0.4818980 0.064921241 1.686220 11 1.273079 1.374532 0.0324764715 1.5681072 0.080118007 8.023097 12 1.273132 1.374604 0.0124397548 0.3159061 0.031617102 5.374376 13 1.272985 1.374467 0.0015330976 -1.9810793 0.008575280 4.362464 15 1.279451 1.381288 0.0005988768 0.3588613 0.006023183 1.502410 16 1.279925 1.381769 0.0142625069 -0.4433213 0.036979686 2.165935 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.921 co2l1 = 0.302 co2l0 = 0.124" [1] "co2l0 = -131.36 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "121 out of 670 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "549 out of 1257 1-min values rejected as stack air" [1] "262 out of 828 Line 1 1-min values rejected as stack air" [1] "287 out of 429 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"