[1] "2025-04-29 19:00:28 MDT" [1] "1306" "130616" "d167" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130616a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 74653 63 [1] 74653 [1] 74653 [1] "testing skipping spike filter" [1] 74653 [1] 74653 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:00:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.786, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "61 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.786, ave o2scale2 = 0.729" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "62 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:00:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:00:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:00:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:00:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 62 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 3 row(s) with variable TFCELL" [1] "TEMP: 1176 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:00:46 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.305 co2off = 384.7 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.77 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 262 271 0.1827935 0.1890571 0.1866226 3 -22.64495 243.57995 3 4 272 281 0.1897528 0.1960159 0.1935800 3 45.56203 158.25960 4 3 282 291 0.1967113 0.2029744 0.2019310 3 81.23211 86.68982 7 4 561 570 0.3915696 0.3978334 0.3953970 2 45.78230 156.23504 8 2 571 580 0.3985289 0.4047917 0.4023559 2 -22.31978 242.61947 9 5 581 590 0.4054873 0.4117500 0.4107058 NA 34.67763 141.97268 13 2 844 853 0.6003180 0.6065817 0.6041467 3 -21.60402 245.50140 14 4 854 863 0.6072801 0.6135428 0.6111058 3 46.29784 156.37288 15 3 864 873 0.6142384 0.6205011 0.6194572 3 81.54692 86.27748 17 5 880 887 0.7912269 0.7960989 0.7957511 NA 34.59900 141.14216 22 4 1146 1154 0.9785092 0.9840769 0.9819874 2 46.39421 155.38134 23 2 1155 1164 0.9847721 0.9910354 0.9885991 2 -21.08043 243.30750 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.274991 1.375060 -0.0113360428 -0.4158708 0.032638107 1.808371 3 1.274828 1.374879 -0.0001568539 -0.3585601 0.009426347 4.107866 4 1.274675 1.374746 0.0073506108 0.1392237 0.019159596 1.134235 7 1.273079 1.372815 0.0018001129 0.5452551 0.005706429 2.737078 8 1.273131 1.372854 0.0164045227 1.1917778 0.042201473 4.179654 9 1.273004 1.372714 -0.0738830186 1.7764443 0.052325902 3.396447 13 1.269766 1.369281 0.0341165472 0.1871605 0.084134631 6.079373 14 1.269585 1.369093 -0.0010993494 1.0852756 0.014207956 3.889540 15 1.269282 1.368820 -0.0134720749 -1.4119772 0.035179050 1.873127 17 1.270518 1.371192 0.3319595354 -27.2143569 0.234936228 19.277132 22 1.267650 1.368024 0.0109628709 0.5324111 0.028329967 3.156512 23 1.267413 1.367743 0.0055161725 -1.5810220 0.023264287 5.283578 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 380.968 co2l1 = 0.302 co2l0 = 0.126" [1] "co2l0 = -132.14 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "96 out of 445 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "349 out of 986 1-min values rejected as stack air" [1] "208 out of 642 Line 1 1-min values rejected as stack air" [1] "141 out of 344 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"