[1] "2025-04-29 18:59:59 MDT" [1] "1306" "130615" "d166" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130615a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84917 63 [1] 84917 [1] 84917 [1] "testing skipping spike filter" [1] 84917 [1] 84917 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 19:00:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.786, ave o2scale2 = 0.729" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "102 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.786, ave o2scale2 = 0.729" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "102 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 19:00:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 19:00:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 19:00:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 19:00:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 102 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 3 row(s) with variable TFCELL" [1] "TEMP: 1309 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 19:00:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.302 co2off = 385.13 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 5 7 [4,] 8 9 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 10 0.001107639 0.0073750 0.00632981 1 80.99748 85.19407 3 4 281 290 0.195962905 0.2022257 0.19979097 2 45.25977 155.78708 4 2 291 300 0.202921296 0.2091840 0.20674896 2 -23.52395 245.77676 5 5 301 310 0.209879659 0.2161512 0.21510591 NA 33.93188 136.87597 7 2 559 568 0.404782407 0.4110514 0.40861039 3 -23.00960 245.32703 8 4 569 575 0.412449219 0.4180416 0.41636891 3 45.45881 158.53971 9 3 576 583 0.418736863 0.4243044 0.42395661 3 81.19884 89.40188 11 4 825 834 0.613580758 0.6198432 0.61740915 2 45.46297 158.81474 12 2 835 844 0.620538542 0.6268011 0.62436588 2 -22.89456 245.96342 14 5 1012 1017 0.789182726 0.7926610 0.79300874 NA 32.86225 133.21483 16 4 1273 1282 0.974054109 0.9803171 0.97788046 2 45.49820 155.85062 17 2 1283 1292 0.981012703 0.9872755 0.98483988 2 -23.09337 244.27908 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.282596 1.382346 1.659397e-02 2.7809222 0.041770362 3.769391 3 1.276917 1.376410 -1.360407e-02 -0.3421601 0.035383091 2.580714 4 1.276813 1.376305 -1.778033e-02 0.4509105 0.075220856 3.602461 5 1.276357 1.375840 -8.788282e-02 1.8835622 0.062225397 2.479149 7 1.271023 1.370100 -4.074087e-03 -0.6997791 0.017851256 2.288267 8 1.270756 1.369857 -2.914997e-03 0.2240268 0.008489884 2.584306 9 1.270574 1.369635 9.640470e-04 -1.7234113 0.007831901 1.220616 11 1.268322 1.367359 -1.087218e-02 -0.2783952 0.027269980 1.724137 12 1.268296 1.367343 8.247412e-05 -0.2894512 0.007658227 2.443574 14 1.268911 1.368719 8.500844e-01 25.7225538 1.339242172 18.215875 16 1.273458 1.373257 -8.433774e-03 -0.6599731 0.021734671 4.730420 17 1.273686 1.373493 -3.159261e-03 0.6258496 0.009952342 2.288321 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.223 co2l1 = 0.3 co2l0 = 0.139" [1] "co2l0 = -132 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "35 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "80 out of 1128 1-min values rejected as stack air" [1] "80 out of 1128 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"