[1] "2025-04-29 18:59:12 MDT" [1] "1306" "130614" "d165" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130614a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:59:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.719" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "77 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.719" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "77 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:59:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:59:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:59:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:59:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 77 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1358 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:59:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.299 co2off = 378.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 6.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 216 222 0.1521376 0.1563148 0.1549236 3 -25.93029 246.11293 3 4 223 232 0.1590964 0.1653596 0.1629254 3 43.99494 156.61538 4 3 233 242 0.1660549 0.1723181 0.1712748 3 80.61163 87.24033 6 4 485 494 0.3608738 0.3671366 0.3647017 2 44.22480 158.37869 7 2 495 504 0.3678322 0.3740955 0.3716609 2 -25.99734 241.42656 9 2 758 765 0.5696530 0.5745220 0.5727832 2 -24.45052 244.28256 10 4 766 774 0.5766123 0.5821759 0.5800893 2 44.52590 163.31901 11 5 775 784 0.5835665 0.5898263 0.5887830 NA 33.22928 140.81836 16 4 1040 1049 0.7784120 0.7846749 0.7822390 2 44.51123 156.19275 17 2 1050 1059 0.7853704 0.7916334 0.7891986 2 -24.70711 241.36071 19 2 1340 1349 0.9871941 0.9934572 0.9910197 2 -24.76505 245.29309 20 4 1350 1358 0.9941528 0.9997164 0.9976301 2 44.63973 161.17976 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.294202 1.394187 -0.012679490 1.2223160 0.02137206 3.595582 3 1.294542 1.394589 0.007492844 0.8145699 0.02041025 2.726144 4 1.294622 1.394655 0.013923363 -1.6771200 0.03540661 2.231617 6 1.290779 1.390835 -0.035257917 0.3247070 0.08715626 4.341550 7 1.290768 1.390824 -0.035170317 -0.1104606 0.08916379 2.793854 9 1.291220 1.391444 -0.031857721 -0.2504309 0.06178681 1.539625 10 1.291090 1.391287 -0.015820571 0.8161762 0.03612894 3.507456 11 1.291589 1.391861 -0.085926450 1.9938168 0.06085538 3.051264 16 1.286056 1.386043 0.015515971 0.3102611 0.03898335 1.678791 17 1.286033 1.386012 0.033290437 -0.5915717 0.08201934 3.914559 19 1.282737 1.382500 -0.005399552 0.5181288 0.01506121 2.063296 20 1.282718 1.382460 0.008748743 -1.4305794 0.02010518 4.951774 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.782 co2l1 = 0.296 co2l0 = 0.165" [1] "co2l0 = -134.3 co2l1 = 0.238" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "42 out of 345 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "303 out of 1202 1-min values rejected as stack air" [1] "264 out of 1146 Line 1 1-min values rejected as stack air" [1] "39 out of 56 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"