[1] "2025-04-29 18:58:25 MDT" [1] "1306" "130613" "d164" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130613a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:58:29 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.72" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "87 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.72" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "86 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:58:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:58:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:58:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:58:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 86 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1350 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:59:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.08 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.295 co2off = 385.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 141 150 0.1083549 0.1146180 0.1121832 2 44.27985 157.75835 3 2 151 160 0.1153135 0.1215774 0.1191425 2 -25.02081 243.81894 5 2 421 430 0.3171019 0.3233647 0.3209298 3 -25.84623 243.42725 6 4 431 440 0.3240602 0.3303231 0.3278874 3 43.99648 154.85769 7 5 441 450 0.3310185 0.3372818 0.3362385 NA 32.84094 138.61717 8 3 451 460 0.3379769 0.3442403 0.3431954 3 80.52780 80.55842 10 4 710 715 0.5258531 0.5293305 0.5282874 2 44.00030 159.92541 11 2 716 725 0.5328082 0.5390708 0.5366343 2 -26.00884 252.33961 13 2 982 990 0.7346030 0.7408673 0.7387777 3 -26.16777 245.08933 14 4 991 1000 0.7415630 0.7478259 0.7453893 3 43.80756 153.38146 15 3 1001 1010 0.7485213 0.7547842 0.7537411 3 80.41252 83.76851 17 4 1271 1280 0.9433811 0.9496528 0.9472141 2 43.97147 153.67799 18 2 1281 1290 0.9503483 0.9566112 0.9541760 2 -25.90140 244.48437 19 5 1291 1300 0.9573067 0.9635696 0.9625265 NA 33.24034 142.46162 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.281322 1.380286 0.0053695797 -2.56129925 0.013633637 6.9952086 3 1.281745 1.380756 0.0160161825 0.44013935 0.041060210 2.7666770 5 1.286825 1.386078 -0.0030463301 0.63564541 0.017922045 7.6883234 6 1.287038 1.386282 0.0003590679 -1.05603207 0.009448045 3.2808137 7 1.287215 1.386427 -0.0839780384 1.51279674 0.059485358 2.0821071 8 1.287211 1.386463 0.0033179346 2.07153260 0.010871087 2.7403220 10 1.291913 1.391490 -0.0057110222 -0.63883519 0.012443348 3.1523103 11 1.292504 1.392159 -0.0073122142 -1.04602880 0.019214746 6.6837186 13 1.296331 1.396138 -0.0157266155 -0.09958509 0.035467251 2.6791995 14 1.296535 1.396299 0.0063275993 0.02091344 0.018238255 3.2963347 15 1.296512 1.396263 0.0010103112 0.71530302 0.014814325 1.1823128 17 1.298215 1.398207 0.0060651388 -0.54420064 0.015513891 2.6949687 18 1.298324 1.398398 0.0198672833 -0.96344680 0.049683563 2.5501981 19 1.298110 1.398214 -0.0750655185 0.62209161 0.053165591 0.9632766 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.933 co2l1 = 0.294 co2l0 = 0.162" [1] "co2l0 = -131.11 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 260 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "204 out of 1163 1-min values rejected as stack air" [1] "204 out of 1163 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"