[1] "2025-04-29 18:56:13 MDT" [1] "1306" "130610" "d161" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130610a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:56:18 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.724" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "542 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.724" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "544 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:56:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:56:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:56:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:56:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 544 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 892 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:56:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.299 co2off = 378.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.01 minutes" [1] "Average Cal: 6.6 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 4 167 173 0.1873576 0.1915302 0.1901395 2 43.67589 156.8873 1.279593 3 2 174 180 0.1943160 0.1984926 0.1970986 2 -25.29833 244.3418 1.279909 6 2 359 364 0.3947345 0.3982118 0.3971685 2 -25.34222 245.7991 1.281742 7 4 365 371 0.4009937 0.4051702 0.4037794 2 43.65316 156.2292 1.281812 10 4 550 556 0.6027720 0.6090313 0.6068059 2 43.69051 161.8207 1.284755 11 2 557 562 0.6097269 0.6159896 0.6142500 2 -25.65798 245.4583 1.284895 13 2 735 741 0.8114861 0.8177491 0.8159411 2 -25.33044 244.5105 1.286630 14 4 742 748 0.8184448 0.8247072 0.8233166 2 43.89129 160.9412 1.286649 jfcv2 co2slp o2slp co2sd o2sd 2 1.377953 0.016628216 0.6004304 0.027194051 1.6003565 3 1.378463 0.008347604 0.9598268 0.017912025 6.3166908 6 1.380090 -0.011157597 1.9096748 0.014488546 3.8225834 7 1.380107 0.003757173 1.2318651 0.014362331 3.1958821 10 1.383418 0.002224848 0.6270764 0.007906207 2.0648202 11 1.383543 -0.015224163 0.5330209 0.047777625 3.5321289 13 1.385526 0.012430333 0.7958608 0.034774012 4.1718091 14 1.385636 0.001722588 -0.0653138 0.016598334 0.7361743 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.905 co2l1 = 0.299 co2l0 = 0" [1] "co2l0 = -133.52 co2l1 = 0.233" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 767 1-min values rejected as stack air" [1] "0 out of 767 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"