[1] "2025-04-29 18:55:47 MDT" [1] "1306" "130609" "d160" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130609a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85514 63 [1] 85514 [1] 85514 [1] "testing skipping spike filter" [1] 85514 [1] 85514 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:55:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.793, ave o2scale2 = 0.738" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "332 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.793, ave o2scale2 = 0.738" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "332 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:55:51 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:55:51 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:56:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:56:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 332 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1092 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:56:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.3 co2off = 382.29 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.18 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 4 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 172 179 0.1258942 0.1321539 0.1297196 2 -25.65186 244.8631 1.248795 3 4 180 185 0.1328492 0.1370220 0.1359786 2 43.39469 158.5426 1.248625 8 4 406 415 0.3345498 0.3408093 0.3383749 2 42.96939 155.3591 1.250464 9 2 416 424 0.3415049 0.3470684 0.3449823 2 -25.91512 246.4916 1.250750 14 4 856 864 0.7676366 0.7732002 0.7711141 2 43.25184 157.0964 1.273725 15 2 865 871 0.7766814 0.7808613 0.7794705 2 -26.18469 238.9307 1.274231 17 2 1070 1076 0.9765277 0.9827870 0.9801441 2 -25.11821 246.3068 1.277285 18 4 1077 1082 0.9834827 0.9897454 0.9873087 2 43.63975 155.3807 1.277262 jfcv2 co2slp o2slp co2sd o2sd 2 1.341709 0.020739629 0.04410338 0.06080326 0.9404983 3 1.341537 0.023954937 -0.55884503 0.03486247 1.7673245 8 1.343813 0.015351655 0.64146350 0.04009354 2.5646375 9 1.344056 0.050718889 -0.18303550 0.11086631 2.0654188 14 1.371352 -0.001836626 -0.85080040 0.03335742 2.9942601 15 1.372039 0.013824918 10.00913220 0.02523007 16.5837116 17 1.375339 -0.004516670 -0.61242378 0.02390624 3.5312188 18 1.375367 0.005433589 1.76373662 0.02324826 6.3683674 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.009 co2l1 = 0.299 co2l0 = 0" [1] "co2l0 = -132.36 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "17 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "133 out of 944 1-min values rejected as stack air" [1] "128 out of 851 Line 1 1-min values rejected as stack air" [1] "5 out of 93 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"