[1] "2025-04-29 18:54:12 MDT" [1] "1306" "130607" "d158" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130607a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:54:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.784, ave o2scale2 = 0.731" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.784, ave o2scale2 = 0.731" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:54:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:54:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:54:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:54:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1426 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:55:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.7" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.29 co2off = 386.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 55 64 0.03823380 0.04449306 0.04205880 3 -29.50597 246.66213 3 4 65 74 0.04518857 0.05144792 0.04901356 3 41.36664 158.44850 4 3 75 84 0.05214352 0.05840263 0.05735934 3 78.44967 85.12807 6 4 354 363 0.24688079 0.25314005 0.25070600 2 41.36877 154.01418 7 2 364 373 0.25383568 0.26009491 0.25766068 2 -29.73073 243.17553 9 2 649 658 0.45537873 0.46163805 0.45920407 3 -30.33748 246.84311 10 4 659 666 0.46372454 0.46859294 0.46685427 3 41.00217 159.85584 11 5 667 676 0.46928825 0.47554751 0.47450423 NA 28.48916 138.24714 12 3 677 686 0.47624308 0.48250231 0.48145909 3 78.24756 86.44295 14 4 945 954 0.66401962 0.67027873 0.66784442 2 41.15847 156.84586 15 2 955 964 0.67097454 0.67723368 0.67479933 2 -30.27911 246.89549 18 2 1244 1253 0.87266039 0.87891944 0.87648539 3 -30.43001 252.82222 19 4 1254 1263 0.87961487 0.88587448 0.88344027 3 41.16352 157.70505 20 3 1264 1273 0.88656962 0.89282879 0.89178579 3 78.56223 79.71586 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.258711 1.351110 -0.0163409611 0.2172495 0.050318195 2.832640 3 1.258833 1.351233 0.0105995801 0.2682213 0.027390890 2.698637 4 1.258906 1.351303 0.0068541591 -1.7918900 0.019979363 2.582416 6 1.268905 1.361906 -0.0010870917 -1.6459849 0.010813503 5.388351 7 1.269292 1.362326 -0.0193953911 -0.8694281 0.048461898 4.442762 9 1.278137 1.371719 0.0019817431 0.3879680 0.010513275 1.988640 10 1.278211 1.371812 0.0015939127 1.1056582 0.008944767 3.460780 11 1.278327 1.371956 -0.0856625905 -0.7611839 0.060678601 1.399632 12 1.278141 1.371883 -0.0003031387 0.5921063 0.006949114 1.038781 14 1.281153 1.375260 0.0067606015 0.5738837 0.017347582 3.708545 15 1.281267 1.375387 0.0063652437 -0.3437937 0.018926041 1.367641 18 1.283665 1.378021 -0.0079769100 -0.9760608 0.024072955 4.671608 19 1.283668 1.378041 0.0143199247 0.1255376 0.035719654 1.257921 20 1.283390 1.377752 0.0106499740 0.4966661 0.027742151 3.979135 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383 co2l1 = 0.288 co2l0 = 0.175" [1] "co2l0 = -130.92 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "103 out of 245 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "142 out of 1242 1-min values rejected as stack air" [1] "124 out of 984 Line 1 1-min values rejected as stack air" [1] "18 out of 258 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"