[1] "2025-04-29 18:50:01 MDT" [1] "1306" "130602" "d153" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130602a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:50:05 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.716" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.765, ave o2scale2 = 0.716" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:50:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:50:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:50:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:50:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1428 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:50:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.27 co2off = 382.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 51 60 0.03713134 0.04339086 0.04095642 2 34.70418 154.91427 4 3 61 70 0.04408626 0.05034534 0.04930231 2 75.00940 86.53668 6 4 339 348 0.23900466 0.24526392 0.24282990 2 34.53472 156.22915 7 2 349 358 0.24595955 0.25221898 0.24978499 2 -43.40626 245.76931 9 2 635 644 0.44781004 0.45408102 0.45164275 3 -41.36958 250.42810 10 4 645 654 0.45477662 0.46103602 0.45860191 3 35.45076 157.11394 11 5 655 664 0.46173151 0.46799074 0.46694743 NA 22.32519 139.78950 12 3 665 674 0.46868634 0.47498345 0.47393989 3 75.19362 82.62922 16 4 935 944 0.65653241 0.66279172 0.66035740 2 35.72627 152.83401 17 2 945 954 0.66348736 0.66974659 0.66731256 2 -40.56479 239.40056 19 2 1235 1244 0.86517940 0.87143993 0.86900536 3 -39.95877 246.93149 20 4 1245 1254 0.87213545 0.87839534 0.87596107 3 36.14345 154.35105 21 3 1255 1264 0.87909097 0.88535069 0.88430749 3 75.77393 85.02498 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.309196 1.398248 0.0007894317 0.6002019 0.01588194 2.565891 4 1.308981 1.398028 0.0077110177 -3.4891940 0.02207323 4.565763 6 1.309860 1.399545 -0.0278938131 0.2590421 0.06867532 3.521690 7 1.309750 1.399462 -0.0438132818 0.2746590 0.11497782 2.048571 9 1.308674 1.398701 0.0197787681 3.1519732 0.04879136 9.375104 10 1.308318 1.398418 -0.0016963209 2.4210234 0.01784611 6.059360 11 1.307971 1.398058 -0.0607737105 3.0231950 0.04304513 4.266248 12 1.307832 1.397943 -0.0166237486 -2.2198221 0.04176573 3.036732 16 1.306196 1.396611 0.0004516837 0.5837516 0.01043377 2.998435 17 1.305995 1.396415 0.0029313382 -1.1141836 0.01652332 4.077380 19 1.303543 1.394261 0.0182800487 -0.4110398 0.04521294 3.919202 20 1.303442 1.394214 0.0186680416 1.4841320 0.04709037 5.738343 21 1.303098 1.393930 0.0080129527 0.6476752 0.02185921 7.004819 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.528 co2l1 = 0.266 co2l0 = 0.167" [1] "co2l0 = -131.29 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "60 out of 330 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "270 out of 1243 1-min values rejected as stack air" [1] "268 out of 746 Line 1 1-min values rejected as stack air" [1] "2 out of 497 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"