[1] "2025-04-29 18:49:19 MDT" [1] "1306" "130601" "d152" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130601a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:49:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.721" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "106 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.721" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "107 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:49:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:49:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:49:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:49:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 107 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1329 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:49:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.8" [1] "position 2 cylinder CB08911 description: MS CO2 = 405.33 O2 = -625.1" [1] "position 3 cylinder CB08905 description: LS CO2 = 394.97 O2 = -542.6" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.267 co2off = 382.39 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.93 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 2 226 234 0.1962363 0.2018003 0.1997140 3 -42.65684 246.24353 5 4 235 244 0.2024956 0.2087550 0.2063207 3 34.78646 156.73208 7 3 251 260 0.2164051 0.2226644 0.2216211 3 75.07410 85.62867 10 4 492 501 0.4042053 0.4104647 0.4080305 2 34.81698 156.37046 11 2 502 511 0.4111602 0.4174190 0.4149852 2 -42.60802 245.84207 13 2 788 797 0.6128465 0.6191055 0.6166714 3 -42.89100 244.23149 14 4 798 807 0.6198010 0.6260602 0.6236262 3 34.63978 157.21356 15 3 808 817 0.6267558 0.6330150 0.6319717 3 75.01851 89.52337 17 4 1077 1086 0.8214870 0.8277463 0.8253120 2 34.62441 157.01247 18 2 1087 1096 0.8284416 0.8347011 0.8322667 2 -42.88494 244.85400 19 5 1097 1106 0.8353965 0.8416552 0.8406123 NA 25.89075 136.42662 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.293918 1.378756 -0.0196156581 0.58288005 0.042826106 2.381587 5 1.293723 1.378514 0.0018995976 -2.33638777 0.021795876 6.894358 7 1.293675 1.378530 -0.0035591804 -2.10222717 0.012650123 2.755039 10 1.298450 1.384153 -0.0177026396 0.92104121 0.043501346 4.582133 11 1.298505 1.384235 -0.0250499047 -0.38787983 0.063357350 2.541763 13 1.303526 1.390350 0.0004689094 0.11174500 0.026600802 2.021432 14 1.303550 1.390399 0.0147794290 0.93351796 0.037893354 3.266348 15 1.303606 1.390498 0.0060907979 2.00930721 0.028475758 2.758712 17 1.306578 1.394718 -0.0169929661 1.21695289 0.042705556 4.032365 18 1.306849 1.395012 -0.0020117176 -0.03972182 0.006468416 1.609183 19 1.307119 1.395298 0.0551787275 -1.18275824 0.039067650 1.887002 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 385.68 co2l1 = 0.265 co2l0 = 0.191" [1] "co2l0 = -132.03 co2l1 = 0.227" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "81 out of 400 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "319 out of 1161 1-min values rejected as stack air" [1] "221 out of 954 Line 1 1-min values rejected as stack air" [1] "98 out of 207 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"