[1] "2025-04-29 18:47:58 MDT" [1] "1305" "130524" "d144" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130524a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 73660 63 [1] 73660 [1] 73660 [1] "testing skipping spike filter" [1] 73660 [1] 73660 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:48:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "101 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.757" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "101 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:48:02 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:48:02 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:48:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:48:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 102 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1125 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:48:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.6" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.337 co2off = 388.41 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.02 minutes" [1] "Average Cal: 8.1 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 7 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 41 50 0.02858307 0.03484606 0.03240955 2 64.95970 83.01321 3 2 51 58 0.03554155 0.04041319 0.03867298 2 -26.37602 245.39960 6 2 293 301 0.23732199 0.24358507 0.24100061 2 -26.83742 243.92359 7 4 302 309 0.24428053 0.24915275 0.24741367 2 65.03902 84.31842 10 4 566 575 0.44612002 0.45238313 0.44994653 2 65.05591 83.60642 11 2 576 585 0.45307862 0.45934144 0.45690574 2 -27.63427 244.35260 13 2 853 862 0.65480168 0.66108015 0.65864311 3 -27.95570 239.48084 14 4 863 870 0.66177564 0.66664795 0.66490634 3 65.12490 82.26883 16 3 879 886 0.67638799 0.68196418 0.68161644 3 33.09987 152.36380 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.312677 1.310872 0.002836237 -0.6315151 0.01082385 1.7086880 3 1.312869 1.311072 -0.012265384 -0.5291950 0.02769574 2.4391729 6 1.316951 1.315540 -0.006444559 -0.3098244 0.02111473 2.6396604 7 1.316760 1.315301 0.007633574 -1.0129390 0.01583497 2.8276070 10 1.323623 1.322764 -0.005169924 -0.4641148 0.01401995 3.2860140 11 1.323850 1.323010 -0.030066505 1.0675675 0.07480912 3.5597440 13 1.328826 1.328471 -0.010375585 -0.8575181 0.02692194 2.3629900 14 1.329066 1.328769 0.018071737 0.1493867 0.03695463 1.5639873 16 1.329288 1.329006 0.001666742 0.1484171 0.00564997 0.1051042 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383.479 co2l1 = 0.336 co2l0 = 0.203" [1] "co2l0 = -130.97 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "84 out of 973 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "84 out of 973 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"