[1] "2025-04-29 18:47:08 MDT" [1] "1305" "130523" "d143" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130523a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:47:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "40 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:47:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:47:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:47:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:47:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 40 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1395 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:47:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.8" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.6" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.343 co2off = 378.14 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.6 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 3 1 6 0.001533883 0.005015075 0.005362862 1 33.81516 159.25902 3 4 277 286 0.193575289 0.199838050 0.197402593 2 64.67950 83.02935 4 2 287 295 0.200533565 0.206101360 0.204013922 2 -25.06140 242.88475 6 2 552 561 0.402330208 0.408590509 0.406156557 3 -25.46248 239.42021 7 4 562 571 0.409286256 0.415545920 0.413111748 3 64.78731 78.99156 8 5 572 581 0.416241262 0.422508102 0.421462073 NA 23.52241 133.59518 9 3 582 591 0.423203675 0.429466435 0.428422056 3 33.78136 152.88091 11 4 840 849 0.611090770 0.617353704 0.614919083 2 64.78227 84.89797 12 2 850 859 0.618048987 0.624312471 0.621878139 2 -25.83596 241.63232 14 2 1139 1148 0.819876244 0.826139352 0.823705078 3 -26.04277 244.81174 15 4 1149 1158 0.826834635 0.833097569 0.830662764 3 64.89715 82.26611 16 3 1159 1168 0.833792969 0.840052633 0.839009201 3 33.64556 150.42610 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.287209 1.283651 -0.0152253069 17.0767112 0.019802311 12.0946803 3 1.290582 1.287214 0.0058550599 0.9846983 0.015718861 2.5618398 4 1.290755 1.287444 -0.0225013706 0.5241152 0.053253617 2.6997555 6 1.298513 1.295583 -0.0140664211 -0.8481007 0.034961282 2.9738530 7 1.298491 1.295577 -0.0007876659 -0.6579934 0.013597983 3.3157277 8 1.298838 1.295939 -0.2011960435 -0.4902064 0.143233317 0.9360862 9 1.299086 1.296194 0.0048211729 -0.2736037 0.013492754 0.7069720 11 1.304302 1.301813 0.0040028596 0.6153856 0.015373945 2.7667774 12 1.304415 1.301935 -0.0165723137 -0.2782384 0.042606667 2.3083460 14 1.308511 1.306342 -0.0059051326 0.1719054 0.017593086 1.3571970 15 1.308457 1.306296 0.0064184976 -0.1521691 0.021555833 1.7839050 16 1.308696 1.306548 -0.0003775545 0.1504495 0.005796012 0.4463424 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383.168 co2l1 = 0.344 co2l0 = 0.184" [1] "co2l0 = -131.02 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "199 out of 525 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "326 out of 1240 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "326 out of 1240 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"