[1] "2025-04-29 18:46:11 MDT" [1] "1305" "130522" "d142" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130522a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:46:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.777" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "8 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:46:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:46:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:46:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:46:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 8 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1427 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:47:03 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.6" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.349 co2off = 383.02 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 210 219 0.1497695 0.1560324 0.1535982 3 -24.10727 241.37422 3 4 220 229 0.1567280 0.1629907 0.1605566 3 64.35291 80.16996 4 5 230 239 0.1636863 0.1699491 0.1689058 NA 23.50597 132.42257 5 3 240 249 0.1706447 0.1769074 0.1758642 3 33.89735 152.65518 7 4 510 519 0.3585634 0.3648272 0.3623901 2 64.48416 81.99882 8 2 520 529 0.3655227 0.3717824 0.3693480 2 -24.38331 241.73048 10 2 807 816 0.5673125 0.5735752 0.5711401 3 -24.97536 241.33887 11 4 817 826 0.5742708 0.5805336 0.5780992 3 64.60405 79.96210 12 3 827 836 0.5812293 0.5874893 0.5864461 3 33.92234 151.43069 14 4 1107 1116 0.7760822 0.7823450 0.7799101 2 64.59498 82.23340 15 2 1117 1126 0.7830405 0.7893035 0.7868695 2 -25.09073 241.49708 16 5 1127 1136 0.7900001 0.7962617 0.7952186 NA 22.89747 135.03153 18 2 1406 1415 0.9848314 0.9910946 0.9886602 2 -24.48632 243.85503 19 4 1416 1425 0.9917911 0.9980567 0.9956192 2 64.53189 83.22992 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.287684 1.284102 -0.001600061 0.5123861163 0.012515702 1.985340 3 1.287393 1.283789 0.004026156 0.1651446437 0.017768914 2.206177 4 1.287193 1.283569 -0.046362161 1.4245053141 0.032836271 2.148980 5 1.286861 1.283239 -0.003907231 -0.7845614740 0.014668698 1.089633 7 1.288895 1.285388 0.001097561 -0.3657403362 0.003005378 1.305801 8 1.289197 1.285703 -0.005759566 0.1217998802 0.016617446 2.137754 10 1.294716 1.291540 0.011042610 -0.0003007034 0.029642734 1.450698 11 1.294622 1.291434 0.008447203 0.1387298317 0.027366650 1.496482 12 1.294700 1.291502 0.008299810 1.7636075716 0.021062459 2.472413 14 1.292120 1.288815 0.002949848 0.4328242812 0.010321763 1.914538 15 1.292109 1.288812 -0.003270657 -1.0266288791 0.036352533 3.826361 16 1.291972 1.288664 -0.043632959 -2.2939193152 0.030891728 3.709716 18 1.287506 1.283920 -0.023418609 0.5103946636 0.057750014 1.432806 19 1.287247 1.283677 0.012335611 -0.3474178269 0.034783494 1.716003 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.909 co2l1 = 0.348 co2l0 = 0.172" [1] "co2l0 = -130.54 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "86 out of 218 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "132 out of 1238 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "132 out of 1238 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"