[1] "2025-04-29 18:45:28 MDT" [1] "1305" "130521" "d141" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130521a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:45:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.773, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "87 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.773, ave o2scale2 = 0.775" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "86 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:45:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:45:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:45:51 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:45:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 86 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1349 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:46:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.6" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.348 co2off = 388.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.71 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 148 157 0.1059827 0.1122569 0.1098136 2 64.15464 82.91100 3 2 158 167 0.1129526 0.1192153 0.1167813 2 -25.13610 242.80634 5 2 443 452 0.3147894 0.3210523 0.3186174 3 -24.92039 243.97509 6 4 453 461 0.3217478 0.3280081 0.3254245 3 64.18566 83.45548 7 3 462 471 0.3287034 0.3349664 0.3339230 3 33.54105 150.12848 9 4 737 746 0.5235683 0.5298277 0.5273934 2 64.21886 81.84017 10 2 747 756 0.5305232 0.5367861 0.5343498 2 -25.29480 242.57222 11 5 757 766 0.5374815 0.5437444 0.5427013 NA 24.67675 133.30148 13 2 1014 1023 0.7323038 0.7385669 0.7361327 3 -24.59335 241.00720 14 4 1024 1029 0.7420517 0.7455324 0.7444885 3 64.36886 82.08950 15 3 1030 1039 0.7462280 0.7524909 0.7514478 3 33.88737 153.87981 17 4 1271 1280 0.9409948 0.9472578 0.9448236 2 64.32591 83.91388 18 2 1281 1290 0.9479533 0.9542161 0.9517804 2 -24.55991 241.48115 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.291774 1.288360 1.378662e-03 -0.2806121 0.004584006 1.4250512 3 1.291966 1.288561 -1.121004e-02 -0.1266489 0.030483729 3.2173868 5 1.293994 1.290714 1.462726e-03 0.3229861 0.013516597 2.4606405 6 1.293722 1.290418 1.179322e-03 0.1767479 0.010502657 3.0353494 7 1.293961 1.290689 -1.046290e-03 -0.8721206 0.010461011 1.1425525 9 1.294255 1.291043 9.825322e-05 -0.3068356 0.007449589 1.6712768 10 1.294669 1.291479 -1.587217e-02 -0.7870015 0.040899768 2.7773415 11 1.294379 1.291183 -1.707723e-01 -0.2463447 0.120915260 0.9172705 13 1.293156 1.289906 9.967861e-03 -0.2933459 0.024573435 0.8594760 14 1.293176 1.289920 5.480160e-03 3.0009175 0.007189470 4.0131639 15 1.293202 1.289933 6.236636e-03 0.3766296 0.018320815 0.6708342 17 1.290964 1.287592 9.374007e-03 -1.1465751 0.024989304 2.9848721 18 1.291044 1.287685 -1.384961e-02 -0.5679810 0.036172408 1.8796703 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383.008 co2l1 = 0.348 co2l0 = 0.177" [1] "co2l0 = -130.86 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "37 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "178 out of 1172 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "178 out of 1172 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"