[1] "2025-04-29 18:44:24 MDT" [1] "1305" "130519" "d139" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130519a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 82645 63 [1] 82645 [1] 82645 [1] "testing skipping spike filter" [1] 82645 [1] 82645 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:44:28 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "160 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.768, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "160 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:44:28 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:44:28 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:44:36 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:44:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 160 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 1212 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:44:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.348 co2off = 378.03 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.17 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 142 150 0.1075103 0.1130811 0.1109950 3 -26.02224 243.42103 3 4 151 160 0.1137804 0.1200445 0.1176072 3 63.65301 84.10204 4 3 161 170 0.1207396 0.1270023 0.1259591 3 32.68010 153.97096 6 4 410 416 0.3156481 0.3219120 0.3205209 2 63.77784 82.18624 7 2 417 426 0.3226073 0.3288670 0.3264325 2 -25.28087 244.89873 8 5 427 436 0.3295625 0.3358219 0.3347785 NA 22.11616 136.12567 10 2 684 691 0.5258079 0.5306801 0.5289413 3 -25.30319 242.71773 11 4 692 701 0.5313751 0.5376380 0.5352041 3 63.79458 78.32084 12 3 702 711 0.5383374 0.5445996 0.5435540 3 33.18839 152.41884 17 4 1023 1031 0.8530658 0.8586325 0.8565433 2 63.93604 80.34203 18 2 1032 1040 0.8593287 0.8648959 0.8628066 2 -24.77565 241.75585 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.311842 1.309782 -0.013443265 -0.02098736 0.030614633 1.754894 3 1.311377 1.309260 0.004873951 0.71585963 0.016632163 3.067767 4 1.311339 1.309229 0.002721729 2.74057742 0.012510038 3.543334 6 1.304490 1.302022 -0.004337669 -0.33385299 0.006883305 4.181765 7 1.304190 1.301677 -0.013919008 -0.16015085 0.038445738 1.915195 8 1.303555 1.301019 -0.035513669 -3.55352551 0.025146485 5.003009 10 1.298498 1.295641 0.002039830 1.70581980 0.004519403 3.418063 11 1.298289 1.295432 0.003070340 0.29068132 0.021542052 1.865782 12 1.298201 1.295321 0.009720019 -1.95417322 0.026039049 2.684181 17 1.297771 1.294777 0.001706273 -0.72483933 0.004616808 2.339786 18 1.298262 1.295335 0.013807798 -0.17493353 0.030493187 2.996441 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 383.176 co2l1 = 0.348 co2l0 = 0.202" [1] "co2l0 = -130.3 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 90 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "68 out of 1033 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "68 out of 1033 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"