[1] "2025-04-29 18:43:32 MDT" [1] "1305" "130516" "d136" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130516a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84478 63 [1] 84478 [1] 84478 [1] "testing skipping spike filter" [1] 84478 [1] 84478 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:43:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "397 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.764" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "397 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:43:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:43:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:43:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:43:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 398 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1009 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:44:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.364 co2off = 370.16 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.09 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 110 116 0.1100012 0.1162639 0.1140385 2 65.27680 81.23247 3 2 117 123 0.1169633 0.1232268 0.1205815 2 -19.65706 242.28488 5 2 306 311 0.3213635 0.3248405 0.3237975 3 -19.33425 241.78976 6 4 312 316 0.3290173 0.3317988 0.3311035 3 65.48988 83.13988 7 3 317 321 0.3359718 0.3387543 0.3417680 3 36.37242 172.54345 9 4 489 494 0.5273239 0.5308017 0.5297585 2 65.64144 81.70619 10 2 495 500 0.5342827 0.5377604 0.5367170 2 -19.11886 240.23723 13 2 703 708 0.7360972 0.7423617 0.7413166 3 -20.44263 241.72590 14 4 709 718 0.7430586 0.7493216 0.7468848 3 65.83381 81.45226 15 3 719 724 0.7500169 0.7562797 0.7566274 3 36.14848 159.18861 17 4 959 968 0.9448532 0.9511163 0.9486804 2 66.00326 80.25242 18 2 969 978 0.9518116 0.9580743 0.9556381 2 -20.49116 243.36720 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.311694 1.309427 0.006157191 -0.7881574 0.020982763 2.7810295 3 1.311889 1.309540 0.003933945 0.8844505 0.020423097 3.0352878 5 1.310280 1.307893 0.002197100 0.3503886 0.003107451 0.9255386 6 1.310026 1.307666 0.007209703 0.4303198 0.007365195 0.5186484 7 1.309834 1.307495 0.014500091 4.8668192 0.014968239 18.6877634 9 1.310087 1.307697 0.017337122 1.6836545 0.022555198 2.2180191 10 1.310100 1.307709 -0.006508068 -0.7544619 0.009419115 1.3829356 13 1.311709 1.309499 0.005863655 -1.9083319 0.013569555 2.5238570 14 1.311629 1.309429 0.009010909 0.4753219 0.027451438 2.8491219 15 1.311601 1.309410 0.003513623 13.2662073 0.004838640 9.3931327 17 1.312015 1.309866 -0.004636092 0.1841897 0.014482187 2.4106420 18 1.311969 1.309804 -0.015974511 0.4859400 0.040715832 2.3051728 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 381.533 co2l1 = 0.363 co2l0 = 0.157" [1] "co2l0 = -130.87 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "93 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "107 out of 866 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "107 out of 866 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"