[1] "2025-04-29 18:42:53 MDT" [1] "1305" "130515" "d135" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130515a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:42:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "66 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.756, ave o2scale2 = 0.757" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "68 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:42:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:42:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:43:13 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:43:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 68 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1368 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:43:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.355 co2off = 387.12 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.68 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 93 102 0.06612598 0.07238863 0.06995421 3 -22.82574 242.21124 3 4 103 112 0.07308397 0.07934722 0.07691211 3 64.83198 80.69522 4 3 113 122 0.08004282 0.08630556 0.08526226 3 34.57371 153.09157 6 4 393 402 0.27491667 0.28117954 0.27874358 2 65.04119 80.68541 7 2 403 412 0.28187500 0.28813802 0.28570284 2 -22.76134 239.09482 8 5 413 422 0.28883345 0.29509685 0.29405370 NA 24.52291 135.68350 10 2 693 702 0.48370828 0.48997104 0.48753672 3 -22.42287 242.34325 11 4 703 712 0.49066644 0.49692911 0.49449441 3 65.13396 85.72860 12 3 713 722 0.49762445 0.50388733 0.50284420 3 35.08548 153.37837 14 4 993 1002 0.69247558 0.69873501 0.69630065 2 65.17663 83.71376 15 2 1003 1012 0.69943056 0.70569334 0.70325740 2 -21.72841 244.08470 17 2 1258 1265 0.90261690 0.90748866 0.90574957 3 -20.38902 242.96993 18 4 1266 1272 0.90818420 0.91444676 0.91263785 3 65.22583 80.77937 20 3 1280 1289 0.92210353 0.92836690 0.92732135 3 35.82394 152.32123 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.329266 1.327695 -0.0077310059 0.5219162 0.023088664 1.613086 3 1.329114 1.327531 0.0051024484 0.5495205 0.016816663 2.312716 4 1.328942 1.327352 -0.0014498112 0.2210172 0.008328692 1.022163 6 1.328403 1.326968 -0.0028578915 -0.5160454 0.007838564 1.848612 7 1.328565 1.327118 -0.0060234333 -0.4409900 0.023602077 2.973408 8 1.328246 1.326781 -0.0317714619 0.4030463 0.022494834 1.236486 10 1.324018 1.322389 0.0006515928 0.1502755 0.006343712 1.866488 11 1.323778 1.322145 0.0111539909 0.1733850 0.029902482 2.967377 12 1.323784 1.322157 0.0072014299 -1.1304605 0.022446811 1.684903 14 1.319578 1.317782 0.0009670753 0.7152897 0.005135008 2.320062 15 1.319778 1.317975 0.0066686178 -0.3067519 0.023205579 1.277587 17 1.314963 1.312854 0.0009800528 0.4525975 0.002716750 1.569636 18 1.314822 1.312682 0.0064205020 -0.3956860 0.017459962 2.220432 20 1.314538 1.312410 0.0036439305 2.5713636 0.010239324 3.345181 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.203 co2l1 = 0.357 co2l0 = 0.175" [1] "co2l0 = -130.76 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "123 out of 364 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "241 out of 1169 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "241 out of 1169 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"