[1] "2025-04-29 18:41:18 MDT" [1] "1305" "130513" "d133" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130513a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:41:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "49 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.777, ave o2scale2 = 0.779" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "51 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:41:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:41:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:41:43 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:41:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 51 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1385 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:42:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -447.9" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.365 co2off = 373.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.65 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 258 267 0.1867940 0.1930579 0.1906202 2 63.59123 80.74707 3 2 268 277 0.1937534 0.2000130 0.1975786 2 -20.82184 239.03541 5 2 553 562 0.3955545 0.4018194 0.3993836 3 -21.03348 240.61299 6 4 563 572 0.4025167 0.4087796 0.4063427 3 63.70342 83.37651 7 5 573 582 0.4094750 0.4157382 0.4146945 NA 27.09563 132.15769 8 3 583 592 0.4164339 0.4226964 0.4216532 3 34.51363 152.10385 10 4 841 850 0.6043085 0.6105711 0.6081370 2 63.76923 82.51124 11 2 851 856 0.6133565 0.6168341 0.6157910 2 -21.46477 241.50038 13 2 1130 1139 0.8130469 0.8193172 0.8168790 3 -22.29223 244.82095 14 4 1140 1149 0.8200127 0.8262723 0.8238376 3 64.02763 81.19766 15 3 1150 1159 0.8269711 0.8332302 0.8321869 3 34.48162 153.46175 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.280566 1.276244 -0.0051568519 2.9004220 0.014319378 8.187335 3 1.280619 1.276308 -0.0012222186 0.1451529 0.018603023 4.307560 5 1.282349 1.278018 -0.0058058682 -0.7504145 0.015802730 3.212529 6 1.282323 1.278005 -0.0001256383 -0.1725315 0.007983643 1.247383 7 1.282728 1.278446 0.0456909825 1.1638073 0.032350135 2.061487 8 1.282794 1.278514 0.0039462482 -0.1097534 0.012900479 0.587446 10 1.286688 1.282518 -0.0036797523 0.6315939 0.012187703 3.312641 11 1.286955 1.282811 0.0115515697 1.0970082 0.015714773 1.485199 13 1.296334 1.292698 0.0142147648 0.4705439 0.035814797 3.438281 14 1.296925 1.293338 0.0114450638 -0.4708125 0.034971663 2.045351 15 1.297592 1.294070 0.0064789748 3.3357026 0.017110997 4.591169 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 382.145 co2l1 = 0.364 co2l0 = 0.168" [1] "co2l0 = -130.7 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "8 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "2 out of 1247 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "2 out of 1247 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"