[1] "2017-04-06 00:21:59 MDT"
[1] "1305"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1305/130513.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1305/130514.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1305/130515.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1305/130516.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1305/130518.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1305/130519.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1305/130520.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1305/130521.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1305/130522.html"  
[10] "/net/www/docs/homes/stephens/GO2/1305/130523.html"  
[11] "/net/www/docs/homes/stephens/GO2/1305/130524.html"  
[12] "/net/www/docs/homes/stephens/GO2/1305/lmg_1305.html"
 [1] "/net/www/docs/homes/stephens/GO2/1305/130513.html"
 [2] "/net/www/docs/homes/stephens/GO2/1305/130514.html"
 [3] "/net/www/docs/homes/stephens/GO2/1305/130515.html"
 [4] "/net/www/docs/homes/stephens/GO2/1305/130516.html"
 [5] "/net/www/docs/homes/stephens/GO2/1305/130518.html"
 [6] "/net/www/docs/homes/stephens/GO2/1305/130519.html"
 [7] "/net/www/docs/homes/stephens/GO2/1305/130520.html"
 [8] "/net/www/docs/homes/stephens/GO2/1305/130521.html"
 [9] "/net/www/docs/homes/stephens/GO2/1305/130522.html"
[10] "/net/www/docs/homes/stephens/GO2/1305/130523.html"
[11] "/net/www/docs/homes/stephens/GO2/1305/130524.html"
[1] "130513" "130524"
 [1] "130513" "130514" "130515" "130516" "130518" "130519" "130520" "130521"
 [9] "130522" "130523" "130524"
[1] "000000" "999999"
[1] "130513_mr_proc.txt, 130513_cal_periods.txt, 130513_cal_param.txt,1385jogs"
[1] "130514_mr_proc.txt, 130514_cal_periods.txt, 130514_cal_param.txt,1341jogs"
[1] "130515_mr_proc.txt, 130515_cal_periods.txt, 130515_cal_param.txt,1368jogs"
[1] "130516_mr_proc.txt, 130516_cal_periods.txt, 130516_cal_param.txt,1009jogs"
[1] "130518_mr_proc.txt, 130518_cal_periods.txt, 130518_cal_param.txt,401jogs"
[1] "130519_mr_proc.txt, 130519_cal_periods.txt, 130519_cal_param.txt,1212jogs"
[1] "130520_mr_proc.txt, 130520_cal_periods.txt, 130520_cal_param.txt,1034jogs"
[1] "130521_mr_proc.txt, 130521_cal_periods.txt, 130521_cal_param.txt,1349jogs"
[1] "130522_mr_proc.txt, 130522_cal_periods.txt, 130522_cal_param.txt,1427jogs"
[1] "130523_mr_proc.txt, 130523_cal_periods.txt, 130523_cal_param.txt,1395jogs"
[1] "130524_mr_proc.txt, 130524_cal_periods.txt, 130524_cal_param.txt,1125jogs"
[1] "130513" "130524" "d133"   "d144"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 00:22:13 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.769"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 00:22:26 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 00:22:44 MDT"
[1] "2017-04-06 00:22:49 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 374.15 O2 = -453.4"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.78 O2 = -549.3"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.13 O2 = -632.5"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.89 O2 = -579"
[1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1305 Valve transient for  Line 2 after Cal = 0.04 , 0.04 , 0.05 , 0.09 , 0.1 n = 46"
[1] "1305 Valve transient for  Line 2 after HS = -2.09 , -1.05 , -0.04 , -0.03 , -0.08 n = 15"
[1] "1305 Valve transient for  Line 2 after MS = 0.33 , 0.22 , 0.08 , 0.1 , 0.11 n = 21"
[1] "1305 Valve transient for  Line 2 after LT = -1.49 , -1.02 , 0.81 , 1.96 , 1.67 n = 10"
[1] "1305 Valve transient for  HS after Line 2 = 1.11 , 0.57 , 0.01 , 0.01 , 0 n = 13"
[1] "1305 Valve transient for  HS after LS = 5.27 , 2.67 , 0.03 , 0.01 , 0.01 n = 16"
[1] "1305 Valve transient for  MS after LS = 1.7 , 0.86 , -0.02 , -0.01 , 0 n = 9"
[1] "1305 Valve transient for  MS after LT = 0.85 , 0.43 , -0.01 , -0.01 , 0 n = 6"
[1] "1305 Valve transient for  LS after Line 1 = 0 , 0 , 0 , NA , NA n = 1"
[1] "1305 Valve transient for  LS after Line 2 = -1.73 , -0.87 , 0 , 0 , 0 n = 16"
[1] "1305 Valve transient for  LS after HS = -5.05 , -2.53 , -0.02 , 0 , 0 n = 13"
[1] "1305 Valve transient for  LT after Line 1 = 0.02 , 0.01 , 0 , NA , NA n = 1"
[1] "1305 Valve transient for  LT after HS = -0.93 , -0.34 , 0.23 , 0.2 , 0.16 n = 6"
[1] "1305 Valve transient for  LT after LS = 1 , 0.53 , 0.06 , 0.05 , 0.04 n = 4"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "275 out of 2390 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "2115 out of 11312 1-min values rejected as stack air"
[1] "0 out of 0 Line 1 1-min values rejected as stack air"
[1] "2115 out of 11312 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1305loxy.d132"
[1] "LMG1305loxy.d133"
[1] "LMG1305loxy.d134"
[1] "LMG1305loxy.d135"
[1] "LMG1305loxy.d136"
[1] "LMG1305loxy.d137"
[1] "LMG1305loxy.d138"
[1] "LMG1305loxy.d139"
[1] "LMG1305loxy.d140"
[1] "LMG1305loxy.d141"
[1] "LMG1305loxy.d142"
[1] "LMG1305loxy.d143"
[1] "LMG1305loxy.d144"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.7407407
 [2,]  97.5 4.4444444
 [3,] 102.5 0.7407407
 [4,] 112.5 1.4814815
 [5,] 117.5 2.2222222
 [6,] 122.5 2.5925926
 [7,] 127.5 2.2222222
 [8,] 132.5 1.1111111
 [9,] 137.5 0.3703704
[10,] 142.5 1.4814815
[11,] 147.5 0.3703704
[12,] 157.5 0.3703704
[13,] 172.5 0.3703704
[14,] 182.5 0.3703704
[15,] 237.5 0.7407407
[16,] 247.5 0.3703704
[17,] 252.5 0.3703704
[18,] 262.5 0.3703704
[19,] 277.5 0.7407407
[20,] 292.5 0.3703704
[21,] 307.5 0.3703704
[22,] 327.5 0.3703704
[23,] 332.5 1.1111111
[24,] 337.5 0.3703704
[25,] 342.5 1.4814815
[26,] 347.5 2.2222222
[27,] 352.5 0.7407407
[28,] 357.5 0.3703704
[29,] 362.5 1.8518519
[30,] 367.5 1.8518519
[31,] 372.5 0.7407407
[32,] 377.5 0.7407407
[33,] 382.5 0.7407407
[34,] 387.5 0.3703704
[35,] 392.5 0.7407407
[36,] 402.5 0.3703704
[37,] 407.5 0.3703704
[38,] 412.5 1.8518519
[39,] 432.5 1.4814815
[40,] 437.5 0.7407407
[41,] 442.5 1.1111111
[42,] 447.5 0.3703704
       [,1]      [,2]
 [1,] 112.5 1.1111111
 [2,] 117.5 0.7407407
 [3,] 152.5 0.3703704
 [4,] 167.5 0.3703704
 [5,] 172.5 0.7407407
 [6,] 317.5 0.3703704
 [7,] 322.5 1.1111111
 [8,] 327.5 3.7037037
 [9,] 332.5 3.3333333
[10,] 337.5 2.2222222
[11,] 342.5 2.5925926
[12,] 347.5 1.1111111
[13,] 357.5 0.7407407
[14,] 362.5 2.5925926
[15,] 367.5 2.9629630
[16,] 372.5 0.7407407
[17,] 377.5 2.5925926
[18,] 382.5 0.7407407
[19,] 387.5 0.7407407
[20,] 392.5 0.3703704
[21,] 397.5 0.7407407
[22,] 402.5 0.3703704
[23,] 412.5 0.3703704
[24,] 422.5 0.3703704
[25,] 432.5 0.3703704
       [,1]      [,2]
 [1,] 157.5 0.3703704
 [2,] 347.5 0.3703704
 [3,] 357.5 0.3703704
 [4,] 362.5 0.3703704
 [5,] 367.5 1.1111111
 [6,] 372.5 2.2222222
 [7,] 377.5 1.4814815
 [8,] 382.5 2.9629630
 [9,] 387.5 1.1111111
[10,] 392.5 1.4814815
[11,] 397.5 1.4814815
       [,1]      [,2]
 [1,] 327.5 0.3703704
 [2,] 337.5 0.3703704
 [3,] 357.5 0.0000000
 [4,] 367.5 1.1111111
 [5,] 372.5 0.3703704
 [6,] 377.5 1.4814815
 [7,] 382.5 4.4444444
 [8,] 387.5 2.5925926
 [9,] 392.5 2.2222222
[1] "making cruise html"
[1] "2017-04-06 00:23:14 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"