[1] "2025-04-29 18:38:23 MDT" [1] "1304" "130504" "d124" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130504a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:38:27 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.763, ave o2scale2 = 0.764" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:38:27 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:38:27 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:38:45 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:38:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1420 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:39:04 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.351 co2off = 383.86 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 7 16 0.005094907 0.01135764 0.008923409 2 74.65376 -63.030224 3 2 17 26 0.012053675 0.01831591 0.015881680 2 -13.83128 97.104256 5 2 306 315 0.213864178 0.22013050 0.217692719 3 -13.34670 97.513010 6 4 316 325 0.220825839 0.22708912 0.224652384 3 74.81691 -62.540149 7 3 326 335 0.227784664 0.23404748 0.233004326 3 44.67475 8.633187 9 4 604 612 0.422721557 0.42899769 0.426507292 2 74.70324 -64.506353 10 2 613 622 0.429694444 0.43596412 0.433527322 2 -13.36870 97.263213 11 5 623 632 0.436660880 0.44292815 0.441883688 NA 36.71669 -9.690873 13 2 896 905 0.631761574 0.63803594 0.635594488 3 -13.31725 96.439705 14 4 906 915 0.638734664 0.64501539 0.642577449 3 74.92544 -63.020723 15 3 916 925 0.645712384 0.65198148 0.650937413 3 44.59321 4.962874 17 4 1192 1201 0.840152170 0.84642708 0.843984559 2 74.90756 -65.948816 18 2 1202 1211 0.847123524 0.85339239 0.850954716 2 -14.21305 94.562967 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.315915 1.313320 0.0060499624 -1.21030786 0.016270126 3.210005 3 1.315701 1.313110 -0.0256928295 -0.93219979 0.067055439 2.671535 5 1.312914 1.310178 0.0418701979 -0.35277292 0.103009577 1.928478 6 1.312413 1.309629 -0.0002687631 0.75374515 0.007942736 2.588302 7 1.312020 1.309166 -0.0015144682 3.89480255 0.007358941 5.134481 9 1.308629 1.305591 0.0082122671 0.45311850 0.022062444 2.605213 10 1.308621 1.305576 -0.0190132883 0.57369457 0.057940379 2.392682 11 1.308765 1.305748 0.0482283056 -0.06064375 0.034206291 1.515301 13 1.309583 1.306577 0.0037575042 -0.12366018 0.010718132 2.756503 14 1.309331 1.306325 0.0002570585 0.41945607 0.022116700 3.663372 15 1.308886 1.305838 0.0039616189 1.27741723 0.011840360 2.039131 17 1.311578 1.308720 0.0036868312 -0.51850661 0.010802870 1.976120 18 1.311683 1.308855 -0.0286350038 0.05674955 0.071880849 1.599060 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.117 co2l1 = 0.351 co2l0 = 0.086" [1] "co2l0 = -98.02 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1239 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "0 out of 1239 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"