[1] "2025-04-29 18:37:42 MDT" [1] "1304" "130503" "d123" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130503a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:37:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "256 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.769, ave o2scale2 = 0.771" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "258 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:37:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:37:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:38:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:38:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 258 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1178 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:38:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.36 co2off = 370.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.51 minutes" [1] "Average Cal: 7.18 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 210 213 0.1741599 0.1762476 0.1758993 2 73.80091 -58.938367 3 2 214 218 0.1783702 0.1832430 0.1825468 2 -11.03858 110.921595 6 2 404 412 0.3788000 0.3843646 0.3822778 3 -11.81416 101.061722 7 4 413 419 0.3857552 0.3920183 0.3893742 3 74.17661 -58.439682 8 3 420 423 0.3948036 0.3968900 0.4000197 3 44.67594 33.510418 10 4 635 644 0.5875671 0.5938391 0.5913974 2 74.33782 -60.534402 11 2 645 650 0.5952300 0.5987112 0.5976660 2 -12.36070 98.501418 13 2 899 905 0.7963540 0.8026128 0.8003874 3 -12.63234 101.782569 14 4 906 915 0.8033082 0.8095709 0.8071370 3 74.59458 -64.999294 15 5 916 925 0.8102665 0.8165292 0.8154862 NA 33.73488 -8.237939 16 3 926 935 0.8172246 0.8234878 0.8224448 3 44.55623 12.132669 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.286508 1.281625 -0.0065428714 2.00574208 0.004640388 1.4225286 3 1.285968 1.281014 -0.0350689168 0.43614689 0.036543528 0.4374192 6 1.295085 1.290788 -0.0019454254 1.01796858 0.010399247 3.6300046 7 1.295470 1.291176 0.0019521126 0.70800604 0.022028871 3.6348691 8 1.295986 1.291714 -0.0003744383 3.85539859 0.000265165 12.1109107 10 1.306712 1.303235 -0.0006985887 -0.98066248 0.021771706 2.5509983 11 1.306921 1.303468 -0.0117001111 -0.87588784 0.016310015 1.1650889 13 1.315001 1.312151 0.0135783605 1.17917126 0.043066830 4.0355257 14 1.314951 1.312119 0.0035679688 -0.34607462 0.017501204 1.7780280 15 1.315148 1.312329 -0.0302160070 0.07188224 0.021389980 1.8813473 16 1.314980 1.312146 -0.0054944435 2.72009932 0.013761316 3.5870553 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.654 co2l1 = 0.36 co2l0 = 0.084" [1] "co2l0 = -99.47 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "3 out of 1042 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "3 out of 1042 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"