[1] "2025-04-29 18:37:06 MDT" [1] "1304" "130502" "d122" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130502a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:37:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "185 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.775, ave o2scale2 = 0.778" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "187 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:37:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:37:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:37:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:37:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 187 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1249 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:37:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.366 co2off = 387.6 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 4.03 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 179 188 0.1260684 0.1323312 0.1298969 3 -11.58212 98.007636 3 4 189 198 0.1330266 0.1392973 0.1368594 3 73.41373 -60.673908 4 3 199 208 0.1399926 0.1462556 0.1452123 3 44.00290 5.627461 6 4 470 475 0.3349201 0.3411829 0.3401399 2 73.66419 -60.318386 7 2 476 485 0.3418785 0.3481476 0.3457112 2 -11.88072 96.893761 9 2 734 740 0.5436910 0.5499541 0.5473092 3 -10.99171 97.890910 10 4 741 750 0.5506495 0.5569087 0.5544747 3 73.59149 -62.104291 11 5 751 760 0.5576049 0.5638638 0.5628208 NA 34.10169 -10.460904 12 3 761 766 0.5645593 0.5708223 0.5711700 3 44.47408 14.061871 14 4 948 952 0.7559366 0.7587328 0.7580341 2 73.60206 -62.214590 15 2 953 960 0.7594292 0.7643032 0.7625637 2 -10.81372 97.589067 17 2 1197 1206 0.9612345 0.9674947 0.9650603 3 -10.98722 98.873850 18 4 1207 1216 0.9681900 0.9744526 0.9720187 3 73.75248 -61.437571 19 3 1217 1225 0.9751481 0.9814109 0.9807156 3 44.60972 8.794919 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.295010 1.290623 -0.0126546272 -0.15725277 0.031389233 2.2078025 3 1.294718 1.290333 0.0042570366 -0.85944687 0.020741009 2.5031667 4 1.294639 1.290269 -0.0077225694 -0.14059131 0.020319846 0.8454671 6 1.295695 1.291435 0.0018351060 -0.12538354 0.010439932 1.3066727 7 1.295758 1.291504 0.0068221642 -0.01288039 0.023482564 1.5102854 9 1.291064 1.286514 0.0107033755 -0.37125192 0.034614017 1.8113795 10 1.290682 1.286072 -0.0036367582 -0.90393146 0.017695037 4.6437686 11 1.290521 1.285898 -0.0320808888 -1.53704215 0.022715805 2.3895633 12 1.290062 1.285421 -0.0052490297 15.08027380 0.006793911 10.6775817 14 1.285079 1.280118 -0.0041312713 2.56354931 0.004872996 2.6186846 15 1.284901 1.279915 0.0009243083 0.42024142 0.015452485 1.9501662 17 1.284992 1.280000 0.0202828737 0.10422263 0.052421753 0.8337650 18 1.284928 1.279923 -0.0002039607 0.15329232 0.016729757 2.7131615 19 1.284245 1.279179 -0.0073919969 -0.53174125 0.020755989 0.5324613 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.475 co2l1 = 0.366 co2l0 = 0.086" [1] "co2l0 = -98.51 co2l1 = 0.225" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "25 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "125 out of 1086 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "125 out of 1086 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"