[1] "2025-04-29 18:36:28 MDT" [1] "1304" "130501" "d121" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130501a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85620 63 [1] 85620 [1] 85620 [1] "testing skipping spike filter" [1] 85620 [1] 85620 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:36:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "23 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:36:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:36:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:36:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:36:47 MDT" [1] "reading in recalculated plot titles" [1] "Removed 23 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:37:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.368 co2off = 378.51 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.11 minutes" [1] "Average Cal: 9.08 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.13 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 115 124 0.08164826 0.08791117 0.08547654 2 72.88141 -62.946730 3 2 125 134 0.08860657 0.09486991 0.09243549 2 -10.92933 98.497033 5 2 411 420 0.29000530 0.29626852 0.29383240 3 -10.93058 98.105462 6 4 421 430 0.29696412 0.30322685 0.30079164 3 73.11648 -59.227128 7 5 431 440 0.30392245 0.31018562 0.30914259 NA 33.84234 -7.871589 8 3 441 450 0.31088099 0.31714381 0.31610081 3 44.19216 8.634983 10 4 711 720 0.49892824 0.50525741 0.50279664 2 73.28906 -58.375315 11 2 721 730 0.50596065 0.51229152 0.50982770 2 -11.14823 95.614267 13 2 991 1000 0.70799112 0.71432865 0.71186215 3 -11.57556 100.394289 14 4 1001 1010 0.71503756 0.72137636 0.71891297 3 73.34276 -61.136572 15 3 1011 1020 0.72207986 0.72841513 0.72735929 3 43.94079 7.625456 17 4 1286 1295 0.91707407 0.92340625 0.92094261 2 73.89737 -61.472384 18 2 1296 1305 0.92410995 0.93044106 0.92797735 2 -13.14793 97.720314 19 5 1306 1315 0.93114473 0.93747150 0.93641710 NA 32.37741 -9.370137 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.277388 1.271803 0.0053357489 -0.2876534 0.014822760 1.709222 3 1.277459 1.271887 -0.0156251397 0.9340709 0.040022646 2.672180 5 1.280724 1.275335 0.0054286856 -0.1133334 0.014235219 1.219363 6 1.280668 1.275271 -0.0010920592 -0.1779506 0.015575771 1.894265 7 1.280879 1.275483 -0.0309001623 2.7610544 0.021876116 3.612233 8 1.280765 1.275370 0.0023165835 1.2159411 0.009144667 1.944717 10 1.283180 1.277985 0.0036171665 0.8261098 0.009885054 3.175582 11 1.283509 1.278318 -0.0003785132 -0.7148092 0.010894171 1.903445 13 1.286647 1.281672 -0.0242802556 0.6164203 0.063145780 2.392660 14 1.286517 1.281559 0.0152491572 -0.1151494 0.038238654 1.232371 15 1.286629 1.281721 -0.0053521428 1.0191898 0.014017286 1.592572 17 1.290799 1.286262 0.0050994698 0.1720984 0.013410708 3.709368 18 1.291353 1.286832 0.0474950318 -1.3999031 0.118539924 4.004991 19 1.291637 1.287091 -0.0158674624 0.2428913 0.011357903 1.374592 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.567 co2l1 = 0.366 co2l0 = 0.09" [1] "co2l0 = -98.56 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 10 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1211 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "0 out of 1211 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"