[1] "2025-04-29 18:35:38 MDT" [1] "1304" "130430" "d120" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130430a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:35:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "8 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.779, ave o2scale2 = 0.782" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:35:43 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:35:43 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:35:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:36:00 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1426 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:36:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.368 co2off = 378.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 52 61 0.03787277 0.04413194 0.04169802 3 -12.60551 99.237043 3 4 62 71 0.04482804 0.05109358 0.04865673 3 72.94221 -62.855383 4 5 72 81 0.05178938 0.05805226 0.05700730 NA 32.57231 -7.468916 5 3 82 91 0.05874780 0.06501042 0.06396681 3 43.68659 8.765747 7 4 352 361 0.24669560 0.25295949 0.25052357 2 72.85148 -62.698272 8 2 362 371 0.25365501 0.25991782 0.25748317 2 -11.76810 98.112475 10 2 652 661 0.45543955 0.46170255 0.45926557 3 -11.55751 96.382587 11 4 662 671 0.46239815 0.46866105 0.46622511 3 72.86800 -63.651811 12 3 672 681 0.46935648 0.47562037 0.47457670 3 43.81988 11.175095 14 4 952 961 0.66417940 0.67044222 0.66800804 2 72.87872 -62.750361 15 2 962 971 0.67113938 0.67740061 0.67496667 2 -11.23851 98.482189 16 5 972 981 0.67809612 0.68435570 0.68331269 NA 33.61744 -10.331327 18 2 1252 1261 0.87290856 0.87917130 0.87673536 3 -10.67569 98.466914 19 4 1262 1271 0.87986684 0.88612616 0.88369173 3 72.75580 -64.335232 20 3 1272 1281 0.88682176 0.89308449 0.89204172 3 44.09040 10.466740 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.290197 1.285519 -0.004331125 0.04740311 0.013674731 4.480226 3 1.290184 1.285524 0.007598114 -0.89456517 0.021355723 3.082398 4 1.290320 1.285641 -0.025588749 4.78985082 0.018119611 6.333054 5 1.290338 1.285658 0.009328221 -0.34089175 0.025179800 1.779711 7 1.287379 1.282496 -0.003260469 0.48693228 0.010169816 1.811405 8 1.287246 1.282355 0.002312977 -0.01144527 0.011139484 3.008073 10 1.285553 1.280571 0.006850551 -0.77810221 0.017589581 2.229782 11 1.285272 1.280280 0.004806958 0.35380633 0.018683035 1.828326 12 1.285062 1.280057 -0.002289854 1.29575040 0.008033829 1.884466 14 1.280644 1.275331 0.006514485 -0.49569072 0.017800952 1.355825 15 1.280594 1.275277 -0.005294128 0.30697128 0.020963069 1.327017 16 1.280275 1.274938 -0.028339576 -1.11011678 0.020064155 1.554777 18 1.277202 1.271612 0.003077075 0.33211648 0.009370058 1.489222 19 1.277029 1.271424 0.003412432 -0.68161616 0.016114675 2.325206 20 1.276789 1.271165 -0.001845239 1.23849080 0.008311254 1.933805 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.602 co2l1 = 0.368 co2l0 = 0.08" [1] "co2l0 = -98.37 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 180 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "116 out of 1219 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "116 out of 1219 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"