[1] "2025-04-29 18:35:02 MDT" [1] "1304" "130429" "d119" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130429a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:35:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.777" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "271 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.774, ave o2scale2 = 0.777" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "268 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:35:07 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:35:07 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:35:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:35:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 268 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1167 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:35:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.363 co2off = 388.48 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.85 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 200 207 0.2028519 0.2091146 0.2071437 3 -12.93239 101.405080 4 4 208 217 0.2098102 0.2160730 0.2136390 3 72.86339 -62.506173 5 3 218 222 0.2167685 0.2202500 0.2237277 3 43.43412 21.454089 7 4 349 356 0.4130045 0.4178763 0.4161370 2 72.74839 -63.394349 8 2 357 366 0.4185718 0.4248359 0.4224006 2 -12.09587 97.860511 9 5 367 376 0.4255313 0.4317989 0.4307500 NA 32.55291 -8.129422 11 2 625 634 0.6203654 0.6266285 0.6241910 3 -12.47170 100.005640 12 4 635 642 0.6273238 0.6335868 0.6313827 3 72.91005 -62.754999 13 3 643 652 0.6342824 0.6405452 0.6395019 3 43.60081 7.592594 15 4 923 932 0.8291134 0.8353727 0.8329384 2 72.73677 -61.116424 16 2 933 942 0.8360719 0.8423310 0.8398970 2 -12.89318 99.253624 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.297010 1.292846 0.018961861 1.0674905 0.04957260 4.415157 4 1.296436 1.292245 -0.002291492 -0.4783548 0.01313171 1.692137 5 1.295882 1.291640 0.011033069 3.4459092 0.01700055 15.144772 7 1.289080 1.284291 -0.013482066 1.4339333 0.02830905 2.895151 8 1.289065 1.284268 -0.019732539 0.3928568 0.04922715 1.777730 9 1.288893 1.284096 -0.047970859 2.4842234 0.03433887 3.225447 11 1.288664 1.283835 -0.009565155 -1.1583220 0.02748365 4.050793 12 1.288902 1.284101 0.011268634 1.1143842 0.03376896 3.288030 13 1.289458 1.284686 0.013407394 2.9293672 0.03440594 3.947154 15 1.290030 1.285307 -0.003501718 0.3501259 0.01113718 1.629726 16 1.289941 1.285238 -0.048180499 0.6426991 0.11892805 4.269150 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 378.922 co2l1 = 0.363 co2l0 = 0.088" [1] "co2l0 = -98.69 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "29 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "206 out of 1016 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "206 out of 1016 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"