[1] "2025-04-29 18:33:19 MDT" [1] "1304" "130426" "d116" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130426a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:33:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "344 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "344 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:33:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:33:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:33:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:33:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 344 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1087 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:33:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.357 co2off = 364.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.02 minutes" [1] "Average Cal: 5.8 minutes" [1] "Shortest Cal: 1.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 5 [4,] 6 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 216 222 0.1790856 0.1832627 0.1818693 2 -14.90927 95.96046 3 4 223 231 0.1839583 0.1902226 0.1878360 2 72.36268 -59.88577 6 4 475 484 0.3857825 0.3920443 0.3896084 2 72.30657 -59.69766 7 2 485 491 0.3934374 0.3976105 0.3962191 2 -14.62506 94.54379 10 2 683 687 0.5945447 0.5973433 0.5966433 1 -14.10658 96.72242 12 4 871 877 0.8038507 0.8094524 0.8074913 1 72.25727 -61.49244 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.312406 1.308913 0.0029130255 1.3483530 0.007868251 3.081215 3 1.312380 1.308872 0.0002991458 -1.0682854 0.015073155 3.462089 6 1.309588 1.305887 0.0012278262 0.4463362 0.005287434 1.653943 7 1.309587 1.305912 -0.0176025062 -0.4278230 0.028009241 1.207691 10 1.303899 1.299930 0.0138584486 1.7552439 0.013970719 2.010726 12 1.297518 1.293087 0.0102120699 -1.0743760 0.024806628 3.725410 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.509 co2l1 = 0.356 co2l0 = 0" [1] "co2l0 = -98.6 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "39 out of 235 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "196 out of 987 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "196 out of 987 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"