[1] "2025-04-29 18:32:40 MDT" [1] "1304" "130425" "d115" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130425a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:32:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "144 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.767, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "144 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:32:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:32:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:33:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:33:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 144 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1290 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:33:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.362 co2off = 374.63 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.45 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 190 199 0.1329043 0.1391670 0.1367298 2 71.82194 -61.295337 3 2 200 209 0.1398624 0.1461216 0.1436876 2 -13.67649 99.062209 4 5 210 219 0.1468172 0.1530771 0.1520339 NA 31.61341 -11.767968 6 2 484 493 0.3416266 0.3478866 0.3454523 3 -13.37470 98.217184 7 4 494 503 0.3485820 0.3548507 0.3524136 3 71.77894 -61.557349 8 3 504 513 0.3555478 0.3618144 0.3607713 3 42.48139 5.628929 10 4 775 781 0.5518345 0.5567064 0.5550349 2 71.99450 -61.399710 11 2 782 788 0.5587928 0.5636648 0.5622730 2 -13.70645 94.652508 13 2 1009 1016 0.7591882 0.7640579 0.7623194 3 -14.62194 95.043940 14 4 1017 1026 0.7661481 0.7724109 0.7699746 3 72.19823 -61.203281 16 3 1035 1042 0.7807604 0.7863275 0.7859798 3 42.45162 10.560740 18 4 1245 1254 0.9680186 0.9742814 0.9718449 2 72.17652 -62.564733 19 2 1255 1264 0.9749769 0.9812397 0.9788044 2 -14.67867 98.391861 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.300953 1.296507 -0.001641601 0.2161688 0.006148279 2.089352 3 1.300918 1.296454 0.006208965 0.1387385 0.021252454 1.812429 4 1.300621 1.296132 -0.026769000 -0.7558036 0.018959301 1.270688 6 1.299156 1.294597 0.002698902 0.3573309 0.012641363 3.451198 7 1.298934 1.294366 0.003961408 -0.5244373 0.012766315 1.902639 8 1.298902 1.294342 -0.001707348 -0.8860918 0.007318012 1.779541 10 1.302698 1.298358 0.010264813 1.5493039 0.021793843 3.575058 11 1.303101 1.298825 0.004330131 -2.5431188 0.010768748 4.071931 13 1.307449 1.303471 0.008724204 -1.4300489 0.020176293 3.829672 14 1.307960 1.304015 0.006893157 0.4477488 0.023577118 2.901872 16 1.307873 1.303895 0.004793348 -1.6227970 0.011305103 1.149212 18 1.311353 1.307675 0.002775933 0.3262139 0.008438971 1.849889 19 1.311398 1.307727 -0.022019405 -0.3038852 0.061398688 2.137839 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.394 co2l1 = 0.361 co2l0 = 0.101" [1] "co2l0 = -98.39 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "58 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "77 out of 1110 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "77 out of 1110 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"