[1] "2025-04-29 18:32:21 MDT" [1] "1304" "130424" "d114" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/130424a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 61732 63 [1] 61732 [1] 61732 [1] "testing skipping spike filter" [1] 61732 [1] 61732 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 18:32:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "93 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.766, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "93 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 18:32:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 18:32:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 18:32:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 18:32:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 93 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 7 row(s) with variable TFCELL" [1] "TEMP: 927 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 18:32:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 374.31 O2 = -448.1" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.97 O2 = -542.7" [1] "position 3 cylinder CB08911 description: LS CO2 = 405.33 O2 = -625.3" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.07 O2 = -572.2" [1] "position 5 cylinder CB10023 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07554 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.361 co2off = 384.76 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.52 minutes" [1] "Average Cal: 7.89 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 186 195 0.1326505 0.1389135 0.1364766 2 71.80184 -62.769615 3 2 196 205 0.1396088 0.1458716 0.1434359 2 -14.32184 98.040290 7 4 529 535 0.7151736 0.7193512 0.7179582 2 71.84867 -61.687797 8 2 536 545 0.7221331 0.7283924 0.7259584 2 -14.97127 93.702853 10 2 821 829 0.9241372 0.9297049 0.9276158 3 -13.95235 94.588235 11 4 830 838 0.9317917 0.9373554 0.9352688 3 71.71638 -64.383149 12 3 839 848 0.9380509 0.9443139 0.9432696 3 42.18458 7.804878 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.302624 1.298272 -0.003532454 -0.6255091 0.011126053 1.948450 3 1.302603 1.298231 0.003209958 -0.0459744 0.020573312 2.638248 7 1.309522 1.305641 0.000373750 -0.3156332 0.003661828 1.077030 8 1.309645 1.305774 -0.001052101 -0.5176103 0.011993430 2.561979 10 1.305200 1.300991 -0.005991948 -0.3439220 0.013961995 1.473612 11 1.304352 1.300094 0.005819005 0.2461989 0.013370591 1.472854 12 1.304233 1.299949 0.010133377 1.4342652 0.025682378 1.926303 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 379.526 co2l1 = 0.36 co2l0 = 0.116" [1] "co2l0 = -98.13 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "57 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "83 out of 815 1-min values rejected as stack air" [1] "0 out of 0 Line 1 1-min values rejected as stack air" [1] "83 out of 815 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"